Gene omics information

Query gene ID	PtpAffx.218377.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	84.9	PtpAffx.218377.1.S1_at	pmrna33971	hypothetical protein	-	9e+0	At5g07475	plastocyanin-like domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.215951.1.S1_at	pmrna30431	hypothetical protein	-	1e+0	At2g26940	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.200083.1.S1_s_at	pmrna151	hypothetical protein	-	9e+0	At5g59310	LTP4 (LIPID TRANSFER PROTEIN 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.146878.3.A1_at	CV229184	-	-	5e+0	At5g35631	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.25648.2.A1_s_at	CV230643	hypothetical protein	-	6e-14	At4g02280	SUS3 (sucrose synthase 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.211166.1.S1_at	pmrna21950	hypothetical protein	-	2e-26	At5g54570	BGLU41 (BETA GLUCOSIDASE 41)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.5	99.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
21.5	99.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
14.2	99.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.3	81.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.2	79.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.2	79.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.82	3e-68	258	PtpAffx.218377.1.S1_s_at	pmrna33971	hypothetical protein	-	9e+0	At5g07475	plastocyanin-like domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.41	2e-38	159	PtpAffx.953.2.A1_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.41	2e-38	159	PtpAffx.953.2.A1_a_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.31	3e-28	125	PtpAffx.953.3.S1_at	CA825166	-	-	1e+0	At1g74620	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	2e-20	99	PtpAffx.218375.1.S1_at	pmrna33969	-	-	3e-1	At4g29470	phospholipase A2, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	2e-20	99	PtpAffx.218375.1.S1_x_at	pmrna33969	hypothetical protein	-	3e-1	At4g29470	phospholipase A2, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	8e-4	44	PtpAffx.153422.1.A1_at	CV257794	-	-	2e-1	At3g22240	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-2	38	PtpAffx.2120.1.S1_at	CV259911	-	-	8e-5	At4g10265	wound-responsive protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	8e-1	34	PtpAffx.210679.1.S1_at	pmrna20941	hypothetical protein	-	1e+0	At5g65158	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e+0	30	Arabidopsis thaliana	At5g07475	830639	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	34	Glycine max	Gma.6333.3.S1_at	BE191371	-	-	1e-37	At5g61410	RPE	C.G.	S.X.	Please select
0.05	4e+0	30	Hordeum vulgare	Contig3732_s_at	Contig3732	-	-	4e+0	At1g56345	pseudouridine synthase family protein	C.G.	S.X.	Please select
0.04	3e-1	36	Oryza sativa	Os06g0256800	9634.m01451	-	Conserved hypothetical protein	4e+0	At4g36660	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-1	36	Triticum aestivum	TaAffx.108400.2.S1_at	CA688729	-	-	4e+0	At2g14500	F-box family protein	C.G.	S.X.	Please select
0.04	1e+1	28	Vitis vinifera	1620728_at	CA818747	hypothetical protein LOC100245878	-	2e+0	At4g14104	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	28	Zea mays	Zm.8703.1.A1_at	BM337839	-	-	1e+0	At4g25330	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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