CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.218375.1.S1_x_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.218375.1.S1_x_at pmrna33969 hypothetical protein - 3e-1 At4g29470 phospholipase A2, putative S.X. H.G.
0.67 91.1 PtpAffx.218375.1.S1_at pmrna33969 - - 3e-1 At4g29470 phospholipase A2, putative S.X. H.G.
0.40 67.0 PtpAffx.203561.1.S1_at pmrna7069 hypothetical protein - 2e-21 At3g27890 NQR (NADPH:QUINONE OXIDOREDUCTASE) S.X. H.G.
0.33 57.5 PtpAffx.126959.1.A1_at CV277847 hypothetical protein - 4e+0 At4g36925 unknown protein S.X. H.G.
0.29 50.5 Ptp.1215.1.A1_at CK090318 cytochrome P450 /// cytochrome P450 /// cytochrome P450 - 3e+0 At1g66540 cytochrome P450, putative S.X. H.G.
0.27 47.1 Ptp.1105.2.A1_s_at BP936421 hypothetical protein - 7e-1 At4g32030 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.7 99.8 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
11.1 99.1 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
10.9 99.1 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.8 98.9 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
8.5 98.6 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.1 98.1 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.2 96.8 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2 95.6 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0 92.9 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.82 1e-62 238 PtpAffx.218375.1.S1_at pmrna33969 - - 3e-1 At4g29470 phospholipase A2, putative C.G. S.X.
0.30 5e-22 103 PtpAffx.953.2.A1_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.30 5e-22 103 PtpAffx.953.2.A1_a_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.29 8e-21 99 PtpAffx.218377.1.S1_s_at pmrna33971 hypothetical protein - 9e+0 At5g07475 plastocyanin-like domain-containing protein C.G. S.X.
0.29 8e-21 99 PtpAffx.218377.1.S1_at pmrna33971 hypothetical protein - 9e+0 At5g07475 plastocyanin-like domain-containing protein C.G. S.X.
0.17 2e-18 91 PtpAffx.953.3.S1_at CA825166 - - 1e+0 At1g74620 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.11 7e-6 50 PtpAffx.153422.1.A1_at CV257794 - - 2e-1 At3g22240 unknown protein C.G. S.X.
0.11 3e-5 48 PtpAffx.221251.1.S1_at pmrna37999 hypothetical protein - 1e+0 At4g09270 unknown protein C.G. S.X.
0.11 3e-5 48 PtpAffx.212996.1.S1_s_at pmrna25412 hypothetical protein - 9e-1 At4g09270 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-1 34 Arabidopsis thaliana At4g29470 829068 phospholipase A2, putative F:phospholipase A2 activity;P:phospholipid metabolic process, lipid catabolic process;C:endomembrane system;MPBO - - - C.G. S.X.
0.06 2e+0 32 Glycine max GmaAffx.18766.1.S1_at BI972133 - - 5e-2 At2g37910 cation/hydrogen exchanger, putative (CHX21) C.G. S.X.
0.07 1e-1 34 Hordeum vulgare HVSMEk0004A14r2_at HVSMEk0004A14r2 - - 7e-1 At2g11005 glycine-rich protein C.G. S.X.
0.04 2e+0 32 Oryza sativa Os08g0135300 AK059320.1 - Hypothetical protein 2e+0 At2g16960 importin beta-2 subunit family protein C.G. S.X.
0.05 1e+0 32 Triticum aestivum TaAffx.64328.2.S1_at BJ310282 - - 1e+0 At3g63480 kinesin heavy chain, putative C.G. S.X.
0.04 1e+0 30 Vitis vinifera 1622013_at CB969546 hypothetical protein LOC100248617 - 1e-3 At2g21370 xylulose kinase, putative C.G. S.X.
0.06 2e+0 30 Zea mays ZmAffx.473.1.A1_at AI677499 Starch synthase IIIb-2 precursor - 3e+0 At3g12145 FLR1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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