Gene omics information

Query gene ID	PtpAffx.218251.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.218251.1.S1_at	pmrna33803	hypothetical protein	-	2e+1	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.218048.1.S1_at	pmrna33565	hypothetical protein	-	2e+0	At5g28450	chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.203993.1.S1_at	pmrna7880	hypothetical protein	-	3e+0	At5g64240	AtMC3 (metacaspase 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.119247.1.A1_at	DN486218	-	-	4e+0	At5g50665	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.211622.1.S1_at	pmrna22777	-	-	9e-6	At1g35580	CINV1 (cytosolic invertase 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.210088.1.S1_at	pmrna19871	hypothetical protein	-	1e+0	At3g09600	myb family transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.7	99.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
15.9	99.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-4	46	PtpAffx.221906.1.S1_at	pmrna39018	hypothetical protein	-	5e+0	At4g14276	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-2	40	PtpAffx.219099.1.S1_at	pmrna34918	-	-	9e-1	At2g28671	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	9e-2	38	PtpAffx.219625.1.S1_at	pmrna35587	hypothetical protein	-	2e+1	At5g63230	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.221929.1.S1_at	pmrna39048	hypothetical protein	-	9e+0	At3g14880	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.220502.1.S1_at	pmrna36895	hypothetical protein	-	4e+0	At5g51940	NRPB6A	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.219258.1.S1_at	pmrna35124	-	-	3e+0	At1g02430	ATARFD1B (ADP-ribosylation factor D1B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.218150.1.S1_at	pmrna33681	hypothetical protein	-	1e+1	At5g03380	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.109748.1.S1_at	CK106057	hypothetical protein	-	3e-13	At1g53570	MAP3KA	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e+0	32	PtpAffx.221378.1.S1_at	pmrna38249	hypothetical protein	-	9e-1	At5g18040	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+1	30	Arabidopsis thaliana	At4g05050	825847	UBQ11 (UBIQUITIN 11)	polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	PsAffx.psZG003xN03f_s_at	PsAffx.psZG003xN03f	-	-	3e-2	At1g78995	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	rbags1n09_s_at	rbags1n09	-	-	5e-1	At1g31812	ACBP6 (acyl-CoA-binding protein 6)	C.G.	S.X.	Please select
0.03	1e-1	38	Oryza sativa	Os05g0184000	9633.m00823	-	Hypothetical protein	1e-1	At3g45910	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Triticum aestivum	Ta.8834.2.S1_x_at	CA637860	-	-	4e+0	At5g62950	catalytic/ nucleotide binding	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1622632_at	CB003772	-	-	1e+0	At4g16820	lipase class 3 family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.19048.1.A1_at	AI857148	carbohydrate transporter/ sugar porter	-	1e+0	At4g26080	ABI1 (ABA INSENSITIVE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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