Gene omics information

Query gene ID	PtpAffx.218039.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.39	64.6	PtpAffx.218039.1.S1_at	pmrna33551	hypothetical protein	-	1e-8	At2g37680	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.210704.1.S1_at	pmrna20996	hypothetical protein	-	1e+0	At5g62740	band 7 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.5285.1.A1_s_at	CV254744	hypothetical protein	-	1e+0	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.457.2.S1_at	CK089199	hypothetical protein	-	8e-1	At3g59360	UTR6 (UDP-GALACTOSE TRANSPORTER 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.108016.1.A1_at	CK091896	-	-	4e-1	At2g43745	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.205407.1.S1_at	pmrna10705	hypothetical protein	-	2e+0	At3g24068	-	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	98.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.8	96.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	1e-153	541	PtpAffx.218039.1.S1_s_at	pmrna33551	hypothetical protein	-	1e-8	At2g37680	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-1	36	PtpAffx.145486.1.S1_at	CF233002	hypothetical protein	-	1e+0	At1g47310	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	34	PtpAffx.204973.1.S1_at	pmrna9835	hypothetical protein	-	6e-39	At1g07630	PLL5	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	34	PtpAffx.201360.1.S1_at	pmrna2696	-	-	3e-1	At1g14315	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	34	Ptp.3581.1.S1_at	CK096222	-	-	2e+0	At4g39880	ribosomal protein L23 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	32	PtpAffx.606.3.S1_at	CV241655	hypothetical protein	-	6e-4	At1g70640	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	32	PtpAffx.223373.1.S1_at	pmrna41340	hypothetical protein	-	2e-59	At3g02750	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	32	PtpAffx.221563.1.S1_at	pmrna38507	hypothetical protein	-	1e-99	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e+0	32	PtpAffx.217422.1.S1_at	pmrna32675	hypothetical protein	-	4e+0	At5g36980	-	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	1e-8	59	Arabidopsis thaliana	At2g37680	818345	-	F:unknown;P:unknown;C:unknown;FMPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-1	34	Glycine max	GmaAffx.93069.1.S1_at	CF805637	-	-	2e-36	At4g00630	KEA2	C.G.	S.X.	Please select
0.15	8e-5	46	Hordeum vulgare	Contig6613_s_at	Contig6613	-	-	2e-18	At2g37680	-	C.G.	S.X.	Please select
0.15	5e-6	52	Oryza sativa	Os01g0144200	AK059740.1	-	Conserved hypothetical protein	7e-25	At2g37680	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+1	30	Triticum aestivum	TaAffx.79315.1.S1_at	CA718381	-	-	3e+0	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1617713_at	CB837302	-	-	7e-1	At1g71260	ATWHY2 (A. THALIANA WHIRLY 2)	C.G.	S.X.	Please select
0.09	3e-16	83	Zea mays	Zm.5653.1.A1_at	BM074926	-	-	1e-34	At2g37680	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage