CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.217772.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.39 64.6 PtpAffx.217772.1.S1_at pmrna33168 hypothetical protein - 1e+0 At5g01700 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.61 87.0 PtpAffx.108576.1.A1_at CV280026 hypothetical protein - 1e+0 At3g52040 unknown protein S.X. H.G.
0.57 84.2 Ptp.1358.2.A1_at CK092478 - - 2e+0 At1g67740 PSBY S.X. H.G.
0.40 67.0 PtpAffx.220532.1.S1_at pmrna36936 hypothetical protein - 4e-1 At4g00310 EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8) S.X. H.G.
0.36 61.6 PtpAffx.36902.3.A1_at CV250738 - - 1e-19 At3g22850 unknown protein S.X. H.G.
0.24 41.8 Ptp.2348.1.S1_at CK092577 hypothetical protein - 8e-21 At3g51800 ATG2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.5 98.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.5 97.8 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7 94.7 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1 93.2 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8 92.1 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 PtpAffx.223042.1.S1_at pmrna40830 hypothetical protein - 9e+0 At4g03945 enzyme inhibitor/ pectinesterase C.G. S.X.
0.02 1e+0 34 PtpAffx.220683.1.S1_at pmrna37093 - - 1e-1 At2g30200 [acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase C.G. S.X.
0.05 1e+0 34 PtpAffx.216154.1.S1_at pmrna30765 hypothetical protein - 5e-2 At1g14900 HMGA (HIGH MOBILITY GROUP A) C.G. S.X.
0.02 1e+0 34 PtpAffx.205598.1.S1_at pmrna11052 hypothetical protein - 1e-8 At5g64660 U-box domain-containing protein C.G. S.X.
0.02 1e+0 34 PtpAffx.201811.1.S1_at pmrna3608 hypothetical protein - 2e-7 At5g64660 U-box domain-containing protein C.G. S.X.
0.02 5e+0 32 PtpAffx.223692.1.S1_at pmrna41825 hypothetical protein - 2e+0 At3g14430 unknown protein C.G. S.X.
0.02 5e+0 32 PtpAffx.223078.1.S1_at pmrna40885 hypothetical protein - 3e+0 At1g02840 SR1 C.G. S.X.
0.02 5e+0 32 PtpAffx.219918.1.S1_at pmrna36083 hypothetical protein - 9e+0 At5g08060 unknown protein C.G. S.X.
0.03 5e+0 32 PtpAffx.219232.1.S1_at pmrna35089 hypothetical protein - 5e+0 At3g21465 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At5g01700 831695 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVB - - - C.G. S.X.
0.03 9e-2 38 Glycine max PsAffx.C11000087_at PsAffx.C11000087 - - 2e+0 At1g54500 rubredoxin family protein C.G. S.X.
0.04 5e-1 34 Hordeum vulgare HVSMEn0023G06r2_at HVSMEn0023G06r2 - - 6e-2 At5g21940 unknown protein C.G. S.X.
0.03 5e-1 36 Oryza sativa Os01g0324800 NM_183801.1 - - 4e-1 At2g15580 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.05 3e-1 36 Triticum aestivum Ta.5506.2.S1_at CA726734 - - 3e+0 At1g53625 unknown protein C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1612377_at CB838880 - - 8e-1 At3g22950 ATARFC1 (ADP-ribosylation factor C1) C.G. S.X.
0.03 4e-1 34 Zea mays Zm.11240.1.A1_at BM340894 - - 1e+0 At3g59540 60S ribosomal protein L38 (RPL38B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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