Gene omics information

Query gene ID	PtpAffx.217704.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.217704.1.S1_at	pmrna33068	hypothetical protein	-	3e-86	Atcg01280	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.211622.1.S1_at	pmrna22777	-	-	9e-6	At1g35580	CINV1 (cytosolic invertase 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.208921.1.S1_at	pmrna17689	hypothetical protein	-	7e-2	At3g06390	integral membrane family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.210627.1.S1_at	pmrna20845	GRAS family transcription factor	-	3e+0	At5g40382	cytochrome-c oxidase	S.X.	H.G.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.205338.1.S1_at	pmrna10569	hypothetical protein	-	9e-1	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.23380.2.S1_at	CX654371	-	-	2e+0	At3g52220	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.3	99.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
10.0	98.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.6	98.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.9	98.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.8	96.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	7e-91	333	PtpAffx.217076.1.S1_at	pmrna32212	hypothetical protein	-	2e-115	Atcg01280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.59	7e-91	333	PtpAffx.217076.1.S1_x_at	pmrna32212	hypothetical protein	-	2e-115	Atcg01280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	1e-27	123	PtpAffx.214088.1.S1_at	pmrna27429	hypothetical protein	-	3e-68	Atcg01280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	3e-22	105	PtpAffx.205414.1.S1_at	pmrna10717	hypothetical protein	-	1e-32	Atcg01280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	36	PtpAffx.216308.1.S1_at	pmrna31002	hypothetical protein	-	3e-88	At3g44730	kinesin motor protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-1	34	PtpAffx.697.4.S1_a_at	CV254473	polyphenol oxidase	-	3e-1	At3g62820	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	9e-1	34	PtpAffx.5629.1.A1_at	CV241420	-	-	1e+0	At5g53880	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	9e-1	34	PtpAffx.39916.1.A1_at	CV259459	hypothetical protein	-	7e+0	At4g22570	APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-1	34	PtpAffx.204064.1.S1_at	pmrna8016	hypothetical protein	-	1e-8	At5g15900	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-86	317	Arabidopsis thaliana	Atcg01280	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.34	1e-67	256	Glycine max	GmaAffx.11697.1.S1_at	CA851483	-	-	0	Atcg01280	-	C.G.	S.X.	Please select
0.05	1e+0	32	Hordeum vulgare	HB16O09r_at	HB16O09r	-	-	6e-1	At1g56420	unknown protein	C.G.	S.X.	Please select
Os06g0288900	0.04	5e+0	Oryza sativa	Os01g0367200	NM_193800.1	-	-	3e+1	At3g18690	MKS1 (MAP kinase substrate 1)	C.G.	S.X.	Please select
0.05	1e+1	30	Triticum aestivum	TaAffx.69305.1.S1_at	BE404558	-	-	2e+0	At5g42440	protein kinase family protein	C.G.	S.X.	Please select
0.07	4e-73	272	Vitis vinifera	1621190_at	CB341294	-	-	0	Atcg01280	-	C.G.	S.X.	Please select
0.05	4e+0	30	Zea mays	ZmAffx.818.1.S1_at	AI770442	plant-specific domain TIGR01568 family protein	-	3e+0	At5g05380	PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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