Gene omics information

Query gene ID	PtpAffx.217605.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.217605.1.S1_at	pmrna32941	hypothetical protein	-	2e+1	At3g55010	PUR5	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.2959.1.S1_at	DN488766	hypothetical protein	-	1e-53	At2g36250	FTSZ2-1	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.200893.1.S1_at	pmrna1754	-	-	9e-84	Atcg00120	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.214054.1.S1_at	pmrna27358	hypothetical protein	-	2e-1	At4g30510	AtATG18b	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.200069.1.S1_s_at	pmrna126	hypothetical protein	-	1e-1	At1g52470	hydrolase	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.215970.1.S1_s_at	pmrna30464	hypothetical protein	-	8e-20	At4g35420	dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.208514.1.S1_at	pmrna16896	hypothetical protein	-	2e+0	At4g27657	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.221089.1.S1_at	pmrna37678	hypothetical protein	-	1e-1	At4g37730	AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.200919.1.S1_at	pmrna1813	hypothetical protein	-	1e+0	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.202018.1.S1_at	pmrna4020	-	-	2e+0	At5g37900	seven in absentia (SINA) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.1	99.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.9	98.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.9	98.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.2	95.6	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	PtpAffx.216353.1.S1_at	pmrna31072	hypothetical protein	-	8e+0	At4g02450	glycine-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	36	PtpAffx.223637.1.S1_at	pmrna41722	hypothetical protein	-	3e+0	At2g11005	glycine-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.221595.1.S1_at	pmrna38561	hypothetical protein	-	2e+0	At4g34620	SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.219950.1.S1_at	pmrna36121	-	-	1e-1	At1g53285	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.218955.1.S1_at	pmrna34720	hypothetical protein	-	2e+1	At5g39190	GER2 (GERMIN-LIKE PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e+0	32	PtpAffx.24832.1.A1_at	CV244456	hypothetical protein	-	1e+0	At3g30730	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.223103.1.S1_at	pmrna40925	-	-	2e+0	At5g64620	C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.219681.1.S1_at	pmrna35651	hypothetical protein	-	5e-1	At1g16810	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e+0	32	PtpAffx.219473.1.S1_at	pmrna35402	-	-	3e+1	At5g07190	ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+1	30	Arabidopsis thaliana	At3g55010	824667	PUR5	encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-1	36	Glycine max	PsAffx.C172000025_at	PsAffx.C172000025	-	-	7e+0	At4g28360	ribosomal protein L22 family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig14053_at	Contig14053	-	-	3e-1	At2g45760	BAP2 (BON ASSOCIATION PROTEIN 2)	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os03g0567000	9631.m03539	-	-	7e-1	At1g79850	RPS17 (RIBOSOMAL PROTEIN S17)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Triticum aestivum	Ta.16450.3.S1_at	CA677708	-	-	1e+0	At2g12646	-	C.G.	S.X.	Please select
0.03	2e+1	28	Vitis vinifera	1614611_at	CA812462	-	-	2e+0	Atcg00380	-	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.17949.1.A1_at	CF627845	-	-	2e-2	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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