CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.217536.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.64 88.4 PtpAffx.217536.1.S1_at pmrna32841 hypothetical protein - 2e-25 At1g05610 APS2 (ADP-glucose pyrophoshorylase small subunit 2) S.X. H.G.
0.48 75.4 PtpAffx.211050.1.S1_at pmrna21708 hypothetical protein - 1e-6 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) S.X. H.G.
0.46 73.7 PtpAffx.222184.1.S1_at pmrna39436 hypothetical protein - 3e-3 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative S.X. H.G.
0.34 58.3 PtpAffx.213185.1.S1_at pmrna25796 hypothetical protein - 2e-5 At1g22400 UGT85A1 S.X. H.G.
0.32 55.2 PtpAffx.210708.1.S1_s_at pmrna21002 hypothetical protein - 1e-1 At2g04570 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.25 43.6 PtpAffx.225735.1.S1_at pmrna45304 hypothetical protein - 3e+0 At4g20780 calcium-binding protein, putative S.X. H.G.
0.21 36.5 PtpAffx.212131.1.S1_x_at pmrna23791 hypothetical protein - 7e-1 At4g11870 unknown protein S.X. H.G.
0.21 36.5 PtpAffx.205485.1.S1_at pmrna10849 hypothetical protein - 9e-17 At1g78060 glycosyl hydrolase family 3 protein S.X. H.G.
0.20 34.6 Ptp.4997.3.A1_at CV232822 hypothetical protein - 2e-5 At3g62770 AtATG18a S.X. H.G.
0.18 30.8 PtpAffx.212310.1.S1_at pmrna24137 hypothetical protein - 1e+0 At3g04220 disease resistance protein (TIR-NBS-LRR class), putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.0 99.6 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
7.6 98.3 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.4 98.2 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.4 97.7 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.89 0 813 PtpAffx.206873.1.S1_at pmrna13646 hypothetical protein - 3e-21 At1g05610 APS2 (ADP-glucose pyrophoshorylase small subunit 2) C.G. S.X.
0.02 2e-1 38 PtpAffx.249.483.S1_at CN524496 condensin complex components subunit - 3e-11 At3g17590 BSH (BUSHY GROWTH) C.G. S.X.
0.01 2e-1 38 PtpAffx.213001.1.S1_at pmrna25423 cc-nbs-lrr resistance protein - 4e-1 At4g16045 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.02 2e-1 38 PtpAffx.136947.1.S1_at BU888550 - - 1e+0 At2g39920 acid phosphatase class B family protein C.G. S.X.
0.02 9e-1 36 PtpAffx.48064.1.S1_at DN498957 hypothetical protein - 1e+0 At1g07130 STN1 C.G. S.X.
0.02 9e-1 36 PtpAffx.218970.1.S1_at pmrna34741 hypothetical protein - 1e-1 At4g01895 systemic acquired resistance (SAR) regulator protein NIMIN-1-related C.G. S.X.
0.01 9e-1 36 Ptp.6928.1.A1_at CV246843 hypothetical protein - 2e-3 At4g38210 ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20) C.G. S.X.
0.01 4e+0 34 PtpAffx.9094.2.S1_at CV260816 fasciclin-like arabinogalactan protein 12.2 - 1e-11 At2g04780 FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7) C.G. S.X.
0.02 4e+0 34 PtpAffx.88606.1.A1_at CV260630 hypothetical protein - 4e-1 At3g62340 WRKY68 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-25 117 Arabidopsis thaliana At1g05610 837066 APS2 (ADP-glucose pyrophoshorylase small subunit 2) Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested. - - - C.G. S.X.
0.02 4e+0 34 Glycine max Gma.2590.4.S1_at BG370154 - - 8e-158 At5g48300 ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1) C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig17426_at Contig17426 - - 5e+0 At5g46780 VQ motif-containing protein C.G. S.X.
0.02 3e-1 38 Oryza sativa Os10g0476400 AK072826.1 - Snf7 family protein 2e-34 At1g03950 VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.85818.1.S1_at CA619346 - - 1e+0 At1g64355 unknown protein C.G. S.X.
0.08 1e-5 50 Vitis vinifera 1616276_at CD009185 hypothetical protein LOC100240927 - 0 At5g48300 ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1) C.G. S.X.
0.04 7e-2 38 Zea mays Zm.12201.1.A1_at BM379502 plastid ADP-glucose pyrophosphorylase large subunit - 3e-13 At5g19220 APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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