Gene omics information

Query gene ID	PtpAffx.217345.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	75.4	PtpAffx.217345.1.S1_s_at	pmrna32563	hypothetical protein	-	2e-9	At4g22030	F-box family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	PtpAffx.22638.1.S1_at	DN503417	hypothetical protein	-	4e-1	At5g52870	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.69940.1.A1_at	CV238070	-	-	7e+0	At5g11080	ubiquitin family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.208315.1.S1_at	pmrna16536	glycosyltransferase, CAZy family GT8	-	1e-13	At1g70090	LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.142992.1.S1_s_at	CA823082	glycosyltransferase, CAZy family GT8	-	3e-4	At1g70090	LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.74635.1.S1_at	CX654131	hypothetical protein	-	6e+0	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.85220.1.S1_at	DN488269	hypothetical protein	-	7e+0	Atmg00120	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.204743.1.S1_at	pmrna9337	hypothetical protein	-	3e-1	At5g46030	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.6	99.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
11.3	99.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.7	97.9	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.4	97.0	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	1e-5	52	PtpAffx.225323.1.S1_at	pmrna44587	hypothetical protein	-	1e-2	At4g04480	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	PtpAffx.7190.1.A1_s_at	CV270522	hypothetical protein	-	3e-30	At3g19910	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	PtpAffx.7190.1.A1_at	CV270522	hypothetical protein	-	3e-30	At3g19910	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-1	38	PtpAffx.203226.1.S1_at	pmrna6394	hypothetical protein	-	4e-15	At3g09370	MYB3R-3 (myb domain protein 3R-3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.5022.1.A1_at	CV239537	-	-	3e-8	At3g46450	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.225836.1.S1_x_at	pmrna45456	tir-nbs-lrr resistance protein	-	1e-1	At1g72890	disease resistance protein (TIR-NBS class), putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.225805.1.S1_x_at	pmrna45409	tir-nbs-lrr resistance protein	-	6e-3	At1g12080	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.225805.1.S1_s_at	pmrna45409	tir-nbs-lrr resistance protein	-	6e-3	At1g12080	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.225452.1.S1_at	pmrna44809	tir-nbs-lrr resistance protein	-	7e-3	At5g45050	TTR1	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-9	63	Arabidopsis thaliana	At4g22030	828292	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	40	Glycine max	GmaAffx.14088.1.A1_at	BI969380	-	-	7e-1	At5g28720	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	Contig20193_at	Contig20193	-	-	1e+0	At4g14830	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	36	Oryza sativa	OsAffx.21920.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Triticum aestivum	TaAffx.120531.1.S1_at	BJ224165	-	-	7e-2	At5g44265	lipid binding	C.G.	S.X.	Please select
0.10	2e-6	52	Vitis vinifera	1614431_at	CB971111	hypothetical protein LOC100252001 /// hypothetical protein LOC100257348 /// hypothetical protein LOC100264220	-	6e-2	At5g42530	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zea mays	Zm.13140.1.A1_at	CD439438	-	-	1e+0	At1g71692	AGL12 (AGAMOUS-LIKE 12)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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