CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.217331.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 74.6 PtpAffx.217331.1.S1_at pmrna32547 hypothetical protein - 1e+0 At1g05290 transcription factor S.X. H.G.
0.44 71.9 PtpAffx.214817.1.S1_at pmrna28680 hypothetical protein - 1e-2 At5g53860 emb2737 (embryo defective 2737) S.X. H.G.
0.42 68.6 PtpAffx.215276.1.S1_at pmrna29369 - - 2e+0 At4g20520 RNA binding / RNA-directed DNA polymerase S.X. H.G.
0.40 67.0 PtpAffx.225864.1.S1_at pmrna45498 hypothetical protein - 1e+0 At4g16500 cysteine protease inhibitor family protein / cystatin family protein S.X. H.G.
0.14 23.5 PtpAffx.219841.1.S1_at pmrna35990 hypothetical protein - 2e+1 At3g26520 TIP2 (TONOPLAST INTRINSIC PROTEIN 2) S.X. H.G.
0.14 23.5 PtpAffx.218039.1.S1_at pmrna33551 hypothetical protein - 1e-8 At2g37680 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.2 99.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2 93.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 3e-101 369 PtpAffx.97176.1.A1_at CK096637 hypothetical protein - 2e+0 At5g66930 unknown protein C.G. S.X.
0.44 6e-99 361 PtpAffx.220848.1.S1_x_at pmrna37298 hypothetical protein - 2e+0 At5g04120 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.44 6e-99 361 PtpAffx.220848.1.S1_at pmrna37298 hypothetical protein - 2e+0 At5g04120 phosphoglycerate/bisphosphoglycerate mutase family protein C.G. S.X.
0.40 9e-95 347 PtpAffx.219249.1.S1_s_at pmrna35108 hypothetical protein - 2e+0 At5g36240 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.58 1e-93 343 PtpAffx.3392.1.S1_at BU895959 hypothetical protein - 8e-1 At3g57910 D111/G-patch domain-containing protein C.G. S.X.
0.40 3e-85 315 PtpAffx.222143.1.S1_at pmrna39379 hypothetical protein - 9e-3 At4g37730 AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7) C.G. S.X.
0.23 3e-79 295 PtpAffx.225421.1.S1_x_at pmrna44761 hypothetical protein - 6e-2 At5g37870 seven in absentia (SINA) family protein C.G. S.X.
0.23 3e-79 295 PtpAffx.225421.1.S1_at pmrna44761 hypothetical protein - 6e-2 At5g37870 seven in absentia (SINA) family protein C.G. S.X.
0.14 3e-73 276 PtpAffx.218872.1.S1_at pmrna34615 hypothetical protein - 1e-1 At2g27280 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At1g05290 837025 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;PO - - - C.G. S.X.
0.05 2e+0 34 Glycine max HgAffx.9183.1.S1_at CB379318 - - 5e+0 At5g37667 unknown protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare HVSMEm0013N06r2_at HVSMEm0013N06r2 - - 5e+0 At2g30570 PSBW (PHOTOSYSTEM II REACTION CENTER W) C.G. S.X.
0.03 6e-1 36 Oryza sativa Os09g0135000 9637.m00341 - - 1e+0 At5g23950 C2 domain-containing protein C.G. S.X.
0.03 5e+0 32 Triticum aestivum Ta.6737.2.S1_a_at CA650100 - - 9e-1 At3g25180 CYP82G1 C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1612769_at CF208417 hypothetical protein LOC100254355 - 1e+0 At1g14860 atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18) C.G. S.X.
0.03 9e+0 30 Zea mays Zm.8711.2.S1_x_at BM338693 autophagy-related 8d - 3e-10 At1g62040 ATG8C (autophagy 8c) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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