Gene omics information

Query gene ID PtpAffx.217198.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6086.0PtpAffx.217198.1.S1_atpmrna32362--1e-99At5g22950VPS24.1S.X.H.G.
0.6791.1PtpAffx.206372.1.S1_atpmrna12649hypothetical protein-1e-29At5g20610unknown proteinS.X.H.G.
0.6086.0PtpAffx.213830.1.S1_atpmrna26987hypothetical protein-2e-10At1g80570F-box family protein (FBL14)S.X.H.G.
0.6086.0PtpAffx.51307.1.S1_s_atCN549402hypothetical protein-1e-42At3g06810IBR3 (IBA-RESPONSE 3)S.X.H.G.
0.3255.2PtpAffx.141946.1.S1_s_atCN518150hypothetical protein-2e-23At2g22370unknown proteinS.X.H.G.
0.3052.0PtpAffx.158765.2.S1_s_atCF118958hypothetical protein-8e-35At3g52950CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.295.6GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
3.594.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
3.494.0GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
3.193.2GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
3.092.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
2.892.1GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
2.691.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
2.590.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.389.8GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue series
2.188.6GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.466e-62238PtpAffx.48855.2.S1_a_atBU835678hypothetical protein-3e-42At5g22950VPS24.1C.G.S.X.
0.389e-49194PtpAffx.48855.1.S1_atCV239604hypothetical protein-1e-20At5g22950VPS24.1C.G.S.X.
0.021e-138PtpAffx.204176.1.S1_atpmrna8225hypothetical protein-2e-16At5g15510-C.G.S.X.
0.021e-138PtpAffx.202933.1.S1_atpmrna5806hypothetical protein-3e-3At3g12480NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)C.G.S.X.
0.041e-138PtpAffx.127010.1.A1_a_atCV252354--4e-3At1g79940ATERDJ2AC.G.S.X.
0.025e-136PtpAffx.3485.1.S1_atDN489125--2e+0At1g17380JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)C.G.S.X.
0.035e-136PtpAffx.159290.1.A1_atCV279305hypothetical protein-2e-2At3g57990unknown proteinC.G.S.X.
0.032e+034PtpAffx.93659.1.S1_s_atCX185324hypothetical protein-1e-25At5g60160aspartyl aminopeptidase, putativeC.G.S.X.
0.022e+034PtpAffx.692.3.A1_atCV275152tubulin alpha-5 chain-8e-157At1g04820TUA4C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.631e-99363Arabidopsis thalianaAt5g22950832359VPS24.1F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBA---C.G.S.X.
0.395e-38159Glycine maxGmaAffx.85330.1.S1_s_atBE822748--2e-29At5g22950VPS24.1C.G.S.X.
0.131e-240Hordeum vulgareContig5731_atContig5731--5e-4At5g22950VPS24.1C.G.S.X.
0.251e-861Oryza sativaOs.28775.1.S1_at---0C.G.S.X.
0.141e-344Triticum aestivumTa.7296.1.S1_atBJ252648--4e-5At3g45000VPS24.2C.G.S.X.
0.614e-78289Vitis vinifera1617306_atCA808681similar to VPS24.1-2e-79At5g22950VPS24.1C.G.S.X.
0.202e-342Zea maysZm.6583.1.A1_atAY111761.1hypothetical protein LOC100273289-2e-3At3g45000VPS24.2C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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