CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.217166.1.S1_x_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 PtpAffx.217166.1.S1_x_at pmrna32318 hypothetical protein - 9e-1 At5g47130 Bax inhibitor-1 family / BI-1 family S.X. H.G.
0.44 71.9 PtpAffx.216462.1.S1_at pmrna31245 - - 1e+0 At5g54150 unknown protein S.X. H.G.
0.36 61.6 PtpAffx.211117.1.S1_at pmrna21838 hypothetical protein - 1e+0 At1g47540 trypsin inhibitor, putative S.X. H.G.
0.15 25.3 PtpAffx.205537.1.S1_at pmrna10955 hypothetical protein - 2e-16 At1g77510 ATPDIL1-2 (PDI-LIKE 1-2) S.X. H.G.
0.07 11.6 PtpAffx.224018.1.S1_at pmrna42250 hypothetical protein - 7e-1 At5g59000 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.02 3.6 PtpAffx.208834.1.S1_at pmrna17515 hypothetical protein - 4e+0 At3g58330 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.9 99.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
18.6 99.7 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
11.6 99.2 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.3 98.2 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7 91.8 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.5 83.5 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 2e-126 452 PtpAffx.220632.1.S1_at pmrna37042 hypothetical protein - 1e+0 At5g47130 Bax inhibitor-1 family / BI-1 family C.G. S.X.
0.66 1e-105 383 PtpAffx.217112.1.S1_at pmrna32254 hypothetical protein - 1e+0 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family C.G. S.X.
0.36 1e-50 200 PtpAffx.219074.1.S1_at pmrna34880 hypothetical protein - 5e-2 At2g02060 transcription factor C.G. S.X.
0.63 1e-50 200 PtpAffx.218129.1.S1_at pmrna33658 hypothetical protein - 1e+0 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family C.G. S.X.
0.36 6e-49 194 PtpAffx.223855.1.S1_x_at pmrna42074 hypothetical protein - 8e-1 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family C.G. S.X.
0.33 6e-46 184 PtpAffx.221240.1.S1_x_at pmrna37980 hypothetical protein - 8e-1 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family C.G. S.X.
0.26 4e-44 178 PtpAffx.217167.1.S1_at pmrna32319 hypothetical protein - 7e-1 At5g60142 DNA binding C.G. S.X.
0.20 3e-38 159 PtpAffx.217170.1.S1_at pmrna32322 hypothetical protein - 4e+0 At5g08150 unknown protein C.G. S.X.
0.28 8e-36 151 PtpAffx.220691.1.S1_at pmrna37103 hypothetical protein - 3e+0 At5g08150 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-1 34 Arabidopsis thaliana At5g47130 834759 Bax inhibitor-1 family / BI-1 family F:unknown;P:negative regulation of apoptosis, anti-apoptosis;C:integral to membrane;BMPOFV - - - C.G. S.X.
0.03 5e+0 32 Glycine max GmaAffx.5960.1.A1_at BU547613 - - 4e-13 At5g12300 C2 domain-containing protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig1434_s_at Contig1434 - - 2e-1 At5g58580 ATL63 (ARABIDOPSIS TÓ C.G. S.X.
0.04 5e-1 36 Oryza sativa Os02g0148000 AK120401.1 - Zinc finger protein 1e+0 At4g27810 unknown protein C.G. S.X.
0.05 2e-1 36 Triticum aestivum Ta.15513.1.S1_at CA485206 - - 3e+0 At4g31700 RPS6 (RIBOSOMAL PROTEIN S6) C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1621450_at CF514889 hypothetical protein LOC100267985 - 3e-10 At5g40200 DegP9 (DegP protease 9) C.G. S.X.
0.04 6e+0 30 Zea mays ZmAffx.357.1.A1_at AI670544 - - 6e-1 At5g67070 RALFL34 (ralf-like 34) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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