Gene omics information

Query gene ID	PtpAffx.217154.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.42	68.6	PtpAffx.217154.1.S1_at	pmrna32305	hypothetical protein	-	4e-1	At3g13857	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.210062.1.S1_at	pmrna19820	hypothetical protein	-	3e-1	At5g54640	RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.99692.1.S1_at	BI124771	-	-	1e+0	Atcg00780	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.200117.1.S1_at	pmrna217	hypothetical protein	-	2e+0	At4g17280	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.65139.1.A1_at	CK093880	-	-	7e-2	At4g08025	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.217979.1.S1_s_at	pmrna33471	hypothetical protein	-	1e+1	At5g36900	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.8	99.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
13.3	99.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
13.0	99.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
10.5	99.0	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	2e-99	363	PtpAffx.216080.1.S1_s_at	pmrna30645	hypothetical protein	-	5e+0	At5g66005	Expressed protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.215669.1.S1_at	pmrna30006	hypothetical protein	-	7e-2	At2g22260	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.207377.1.S1_at	pmrna14631	-	-	6e-3	At5g66440	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.49655.1.A1_at	DN496344	hypothetical protein	-	6e+0	At4g24290	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.210931.1.S1_at	pmrna21478	-	-	6e-17	At3g05030	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.210931.1.S1_s_at	pmrna21478	-	-	6e-17	At3g05030	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.5809.1.S1_at	CX169788	hypothetical protein	-	9e-90	At5g03940	CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.2338.1.A1_at	CV267067	hypothetical protein	-	2e-124	At1g71820	SEC6	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.210037.1.S1_at	pmrna19777	hypothetical protein	-	1e+0	At4g21880	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-1	36	Arabidopsis thaliana	At3g13857	2745883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	Gma.16337.1.A1_at	BI968918	-	-	4e-6	At3g15180	proteasome-related	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HU03G13u_at	HU03G13u	-	-	2e-1	At5g65520	binding	C.G.	S.X.	Please select
0.08	2e-4	48	Oryza sativa	OsAffx.22766.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Triticum aestivum	Ta.29462.1.A1_x_at	CK214572	-	-	2e+0	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1615918_at	CD797632	hypothetical protein LOC100247805	-	3e+0	At5g19050	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.1395.1.S1_at	40794996-70	-	-	2e-1	At1g80700	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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