CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.217123.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.217123.1.S1_s_at pmrna32266 hypothetical protein - 2e-1 At5g49120 senescence-associated protein-related S.X. H.G.
0.36 61.6 PtpAffx.206245.1.S1_at pmrna12391 hypothetical protein - 4e-93 At5g02250 EMB2730 (EMBRYO DEFECTIVE 2730) S.X. H.G.
0.14 23.5 PtpAffx.211281.1.S1_at pmrna22128 hypothetical protein - 2e-1 At5g57920 plastocyanin-like domain-containing protein S.X. H.G.
0.12 19.6 PtpAffx.210235.1.S1_at pmrna20149 hypothetical protein - 0 At5g53170 FTSH11 (FtsH protease 11) S.X. H.G.
0.11 18.1 PtpAffx.204090.1.S1_at pmrna8074 hypothetical protein - 5e-17 At5g39940 - S.X. H.G.
0.09 14.6 PtpAffx.135096.2.S1_a_at BI122655 hypothetical protein - 8e-17 At4g02790 GTP-binding family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.6 97.2 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.2 95.6 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9 95.1 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7 94.7 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2 93.5 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1 93.2 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.70 0 771 PtpAffx.222169.1.S1_at pmrna39414 hypothetical protein - 1e-34 At1g78915 binding C.G. S.X.
0.07 1e-21 103 PtpAffx.207477.1.S1_at pmrna14843 hypothetical protein - 9e-4 At2g37310 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.04 4e-3 42 PtpAffx.49812.1.A1_at DN489026 - - 2e-6 At5g14120 nodulin family protein C.G. S.X.
0.03 7e-2 38 PtpAffx.95470.1.A1_at CV244731 - - 1e-1 At3g16780 60S ribosomal protein L19 (RPL19B) C.G. S.X.
0.04 7e-2 38 PtpAffx.49812.2.A1_at CV270325 - - 3e-11 At3g01930 nodulin family protein C.G. S.X.
0.02 7e-2 38 PtpAffx.221053.1.S1_at pmrna37611 chromatin remodeling complex subunit - 3e-46 At2g44980 transcription regulatory protein SNF2, putative C.G. S.X.
0.06 3e-1 36 PtpAffx.97257.1.A1_at CK093972 - - 2e+0 At3g10210 - C.G. S.X.
0.02 3e-1 36 PtpAffx.572.1.S1_at CK111156 AP2 domain-containing transcription factor - 4e-6 At1g68840 RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE) C.G. S.X.
0.07 3e-1 36 PtpAffx.43377.1.A1_s_at CV274860 hypothetical protein - 5e-1 At5g07930 MCT2 (mei2 C-Terminal RRM only like 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 36 Arabidopsis thaliana At5g49120 834971 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPFMBV - - - C.G. S.X.
0.05 3e-1 36 Glycine max GmaAffx.81618.1.S1_at AW706403 - - 2e-1 At5g02760 protein phosphatase 2C family protein / PP2C family protein C.G. S.X.
0.04 9e-2 36 Hordeum vulgare Contig16025_at Contig16025 - - 5e+0 At5g23535 KOW domain-containing protein C.G. S.X.
0.05 9e-2 38 Oryza sativa Os08g0144300 9636.m00417 - - 1e+0 At3g43520 unknown protein C.G. S.X.
0.05 5e-2 38 Triticum aestivum TaAffx.59568.1.S1_at CA598807 - - 4e-3 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) C.G. S.X.
0.04 4e-3 40 Vitis vinifera 1619265_at CB836287 - - 1e+0 At2g39440 - C.G. S.X.
0.05 1e-3 42 Zea mays Zm.3230.1.A1_at BM335873 - - 5e-3 At5g42510 disease resistance-responsive family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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