CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.216803.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 67.0 PtpAffx.216803.1.S1_at pmrna31830 hypothetical protein - 4e-4 At5g01860 zinc finger (C2H2 type) family protein S.X. H.G.
0.50 78.6 PtpAffx.201423.1.S1_at pmrna2810 hypothetical protein - 3e-10 At3g53750 ACT3 (actin 3) S.X. H.G.
0.40 67.0 PtpAffx.209406.1.S1_at pmrna18631 hypothetical protein - 3e-13 At5g03250 phototropic-responsive NPH3 family protein S.X. H.G.
0.33 57.5 PtpAffx.202125.1.S1_at pmrna4247 hypothetical protein - 2e-40 At3g60460 DUO1 (DUO POLLEN 1) S.X. H.G.
0.25 43.6 PtpAffx.155756.1.S1_at CF229353 - - 4e+0 At5g67490 unknown protein S.X. H.G.
0.22 38.3 PtpAffx.209471.1.S1_at pmrna18781 hypothetical protein - 2e-1 At5g67590 FRO1 (FROSTBITE1) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.7 99.7 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.1 98.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.9 97.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.8 97.4 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.7 96.3 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3 93.7 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2 93.5 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.80 1e-152 539 PtpAffx.214545.1.S1_at pmrna28263 hypothetical protein - 7e-6 At5g01860 zinc finger (C2H2 type) family protein C.G. S.X.
0.50 2e-56 220 PtpAffx.203574.1.S1_s_at pmrna7102 hypothetical protein - 2e-3 At1g67030 ZFP6 (ZINC FINGER PROTEIN 6) C.G. S.X.
0.55 7e-56 218 PtpAffx.214546.1.S1_at pmrna28264 hypothetical protein - 5e-4 At5g14010 zinc finger (C2H2 type) family protein C.G. S.X.
0.07 2e-6 54 PtpAffx.206031.1.S1_at pmrna11952 hypothetical protein - 6e-2 At2g17770 ATBZIP27 C.G. S.X.
0.04 9e-3 42 PtpAffx.4636.1.A1_at CV283570 hypothetical protein - 2e-12 At2g41940 ZFP8 (ZINC FINGER PROTEIN 8) C.G. S.X.
0.04 9e-3 42 PtpAffx.208939.1.S1_at pmrna17714 hypothetical protein - 2e-3 At1g68360 zinc finger protein-related C.G. S.X.
0.03 1e-1 38 PtpAffx.144014.1.S1_a_at BU828870 hypothetical protein - 8e-36 At2g26580 YAB5 (YABBY5) C.G. S.X.
0.02 1e-1 38 PtpAffx.11742.1.A1_at CV254453 hypothetical protein - 1e-17 At5g25160 ZFP3 (ZINC FINGER PROTEIN 3) C.G. S.X.
0.02 1e-1 38 Ptp.1114.1.S1_at AJ773836 hypothetical protein - 1e-44 At2g26580 YAB5 (YABBY5) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-4 46 Arabidopsis thaliana At5g01860 831739 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;P - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.70502.1.A1_s_at CD399849 - - 8e-7 At3g13610 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.04 3e+0 32 Hordeum vulgare HVSMEg0002E24r2_at HVSMEg0002E24r2 - - 2e+0 At2g01990 unknown protein C.G. S.X.
0.02 3e+0 34 Oryza sativa OsAffx.25215.1.S1_at - - - 0 C.G. S.X.
0.04 3e-2 40 Triticum aestivum Ta.1823.2.A1_a_at CA735894 - - 2e+0 At3g60180 uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1619257_at CD799242 - - 2e-1 At5g22120 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.13035.1.A1_at CA403687 NOL1R - 6e+0 At5g05530 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage