Gene omics information

Query gene ID	PtpAffx.216781.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	PtpAffx.216781.1.S1_at	pmrna31778	hypothetical protein	-	2e-7	At2g42250	CYP712A1	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.5285.1.A1_at	CV254744	-	-	1e+0	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.43305.1.A1_at	CV242686	hypothetical protein	-	2e-28	At1g51100	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.20736.1.S1_at	BP932567	-	-	0	Atcg00020	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.11036.1.A1_at	CV283821	-	-	1e+0	At5g16800	GCN5-related N-acetyltransferase (GNAT) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.215351.1.S1_at	pmrna29489	hypothetical protein	-	6e-1	At1g15800	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.6	98.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
9.0	98.7	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.9	98.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.4	97.7	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.81	0	1033	PtpAffx.213312.1.S1_at	pmrna26035	cytochrome P450	-	3e-3	At5g06905	CYP712A2	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	8e-8	59	PtpAffx.206488.1.S1_at	pmrna12870	cytochrome P450	-	1e-2	At2g42250	CYP712A1	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e-6	56	PtpAffx.213320.1.S1_at	pmrna26055	hypothetical protein	-	2e-1	At4g15350	CYP705A2	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-2	42	PtpAffx.33411.1.S1_at	CA825123	cytochrome P450	-	5e-13	At2g42250	CYP712A1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-2	42	PtpAffx.225019.1.S1_at	pmrna44032	cytochrome P450	-	1e-2	At2g39590	40S ribosomal protein S15A (RPS15aC)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-2	40	PtpAffx.81315.1.S1_s_at	CA933633	hypothetical protein	-	2e-13	At2g12480	serine carboxypeptidase S10 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-2	40	PtpAffx.206294.1.S1_at	pmrna12478	cytochrome P450	-	1e-2	At3g48300	CYP71A23	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-2	40	PtpAffx.205585.1.S1_at	pmrna11034	-	-	3e-12	At5g42240	scpl42 (serine carboxypeptidase-like 42)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-2	40	PtpAffx.201818.1.S1_at	pmrna3622	hypothetical protein	-	1e-20	At5g42240	scpl42 (serine carboxypeptidase-like 42)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-7	57	Arabidopsis thaliana	At2g42250	818826	CYP712A1	member of CYP712A	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-2	42	Glycine max	GmaAffx.5475.2.S1_at	BF066387	-	-	9e-4	At4g13310	CYP71A20	C.G.	S.X.	Please select
0.02	2e-3	44	Hordeum vulgare	Contig14663_s_at	Contig14663	-	-	1e+0	At4g38940	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.02	4e-1	38	Oryza sativa	Os10g0171500	AK058441.1	-	E-class P450, group I family protein	8e-1	At4g16240	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-2	40	Triticum aestivum	TaAffx.57561.1.S1_at	CA627082	-	-	4e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.03	1e-3	44	Vitis vinifera	1613920_at	CB979957	hypothetical protein LOC100260935	-	2e+0	At1g07830	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.02	6e-3	42	Zea mays	Zm.5605.1.S1_at	CO528780	-	-	1e+0	At1g18680	HNH endonuclease domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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