Gene omics information

Query gene ID PtpAffx.216713.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7192.6PtpAffx.216713.1.S1_atpmrna31668hypothetical protein-7e-7At3g45290MLO3 (MILDEW RESISTANCE LOCUS O 3)S.X.H.G.
0.6187.0PtpAffx.223809.1.S1_s_atpmrna42009hypothetical protein-3e+0At5g45370nodulin-related / integral membrane family proteinS.X.H.G.
0.6187.0PtpAffx.213725.1.S1_atpmrna26782cytochrome P450 probable campestanol to 6-deoxocathasterone or 6-oxocampestanol to cathasterone-8e+0At4g24972TPD1 (TAPETUM DETERMINANT 1)S.X.H.G.
0.6086.0PtpAffx.223306.1.S1_s_atpmrna41231hypothetical protein-2e+0At2g09388unknown proteinS.X.H.G.
0.5582.2PtpAffx.74112.1.A1_atBP930450hypothetical protein-8e-5At1g32350AOX1D (alternative oxidase 1D)S.X.H.G.
0.5582.2PtpAffx.74004.1.A1_atDN487047hypothetical protein-9e-1At1g29951CPuORF35 (Conserved peptide upstream open reading frame 35)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.999.7GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
17.899.7GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
13.199.4GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
12.399.3GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
10.299.0GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.597.8GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.794.7GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.092.9GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.892.1GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.987.2GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.071e-242PtpAffx.219752.1.S1_atpmrna35795hypothetical protein-5e-5At1g26700MLO14 (MILDEW RESISTANCE LOCUS O 14)C.G.S.X.
0.066e-240PtpAffx.69911.1.A1_a_atCV237827hypothetical protein-8e-2At2g44110MLO15 (MILDEW RESISTANCE LOCUS O 15)C.G.S.X.
0.036e-240PtpAffx.15679.1.S1_atCV268237hypothetical protein-9e-12At2g39200MLO12 (MILDEW RESISTANCE LOCUS O 12)C.G.S.X.
0.022e-138PtpAffx.209732.1.S1_atpmrna19210hypothetical protein-3e-2At5g53590auxin-responsive family proteinC.G.S.X.
0.022e-138PtpAffx.203743.1.S1_atpmrna7397hypothetical protein-1e-1At2g23080casein kinase II alpha chain, putativeC.G.S.X.
0.022e-138PtpAffx.200935.1.S1_atpmrna1838hypothetical protein-1e-16At5g40250zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.022e-138Ptp.6937.1.S1_atDN498254--6e-2At5g18690AGP25 (ARABINOGALACTAN PROTEINS 25)C.G.S.X.
0.029e-136PtpAffx.25513.1.A1_atDN484974magnesium transporter-3e-5At2g03620magnesium transporter CorA-like family protein (MRS2-5)C.G.S.X.
0.019e-136PtpAffx.224659.1.S1_atpmrna43414hypothetical protein-2e-14At1g69170squamosa promoter-binding protein-like 6 (SPL6)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.127e-756Arabidopsis thalianaAt3g45290823667MLO3 (MILDEW RESISTANCE LOCUS O 3)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).---C.G.S.X.
0.022e-138Glycine maxPsAffx.psHB022xF10f_atPsAffx.psHB022xF10f--4e+0At5g61050histone deacetylase-related / HD-relatedC.G.S.X.
0.025e+032Hordeum vulgareHVSMEi0012N18r2_atHVSMEi0012N18r2--1e+1At5g18310unknown proteinC.G.S.X.
0.021e+036Oryza sativaOs02g0170200AK107753.1-Conserved hypothetical protein4e-1At4g08570heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedC.G.S.X.
0.022e-138Triticum aestivumTaAffx.57927.1.S1_atCA623817--4e+0At3g53020STV1 (SHORT VALVE1)C.G.S.X.
0.028e-134Vitis vinifera1618564_atCD004713--1e+0At3g25011unknown proteinC.G.S.X.
0.024e+032Zea maysZm.5851.15.A1_x_atAI759130--9e-1At2g04031-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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