CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.216470.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.216470.1.S1_s_at pmrna31254 hypothetical protein - 6e-24 At5g05110 cysteine protease inhibitor, putative / cystatin, putative S.X. H.G.
0.56 83.9 PtpAffx.145335.1.A1_at BP935822 hypothetical protein - 4e+0 At4g15620 integral membrane family protein S.X. H.G.
0.55 82.2 PtpAffx.1941.1.S1_a_at CK089676 - - 6e-1 At3g24800 PRT1 (PROTEOLYSIS 1) S.X. H.G.
0.43 69.7 Ptp.4563.1.S1_at DN490347 hypothetical protein - 2e-19 At4g39100 SHL1 (short life) S.X. H.G.
0.38 63.7 PtpAffx.117819.1.S1_at CK095818 hypothetical protein - 2e-1 At4g02800 unknown protein S.X. H.G.
0.25 43.6 PtpAffx.56274.1.S1_at CV271474 hypothetical protein - 1e+0 At3g44590 60S acidic ribosomal protein P2 (RPP2D) S.X. H.G.
0.08 12.9 PtpAffx.200899.1.S1_at pmrna1767 hypothetical protein - 2e-3 At4g14590 emb2739 (embryo defective 2739) S.X. H.G.
0.05 8.3 PtpAffx.151516.1.A1_at DN492922 hypothetical protein - 2e-30 At3g13530 MAPKKK7 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.8 99.6 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
16.6 99.6 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
10.9 99.1 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6 84.5 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.4 82.3 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1130 PtpAffx.216470.1.S1_at pmrna31254 hypothetical protein - 6e-24 At5g05110 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.57 5e-170 597 Ptp.4817.1.S1_a_at CV259563 hypothetical protein - 2e-24 At5g05110 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.47 1e-124 446 PtpAffx.98782.2.S1_a_at CK097784 hypothetical protein - 6e-24 At5g05110 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.47 1e-124 446 PtpAffx.98782.2.S1_at CK097784 hypothetical protein - 6e-24 At5g05110 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.19 3e-122 438 PtpAffx.224510.1.S1_at pmrna43115 cytochrome P450 - 4e-34 At2g40890 CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3) C.G. S.X.
0.30 1e-19 97 Ptp.2653.3.S1_s_at CF936964 hypothetical protein - 1e-22 At3g12490 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.15 5e-19 95 PtpAffx.7624.3.S1_at CV269982 - - 1e-25 At1g73030 VPS46.2 C.G. S.X.
0.22 5e-19 95 PtpAffx.203573.1.S1_at pmrna7100 hypothetical protein - 2e-22 At3g12490 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.16 5e-13 75 PtpAffx.12435.1.S1_s_at CV240289 hypothetical protein - 2e-13 At3g12490 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 6e-24 111 Arabidopsis thaliana At5g05110 830393 cysteine protease inhibitor, putative / cystatin, putative F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PMO - - - C.G. S.X.
0.09 7e-6 52 Glycine max Gma.3314.1.S1_at BQ272624 cysteine proteinase inhibitor - 2e-8 At3g12490 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.05 3e-2 38 Hordeum vulgare HT08H03u_s_at HT08H03u - - 1e-2 At5g12140 ATCYS1 (A. thaliana cystatin-1) C.G. S.X.
0.04 2e+0 34 Oryza sativa Os05g0494200 J05595.1 - Cysteine proteinase inhibitor-II(Oryzacystatin-II) 5e+0 At5g12140 ATCYS1 (A. thaliana cystatin-1) C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.541.1.S1_at CD863166 - - 2e-2 At5g12140 ATCYS1 (A. thaliana cystatin-1) C.G. S.X.
0.34 7e-27 119 Vitis vinifera 1607095_s_at CA809109 hypothetical protein LOC100258481 - 2e-18 At5g05110 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.11 5e-13 73 Zea mays Zm.14272.3.A1_at BG835930 Corn cystatin I - 1e-7 At5g05110 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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