CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.216450.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.216450.1.S1_at pmrna31230 hypothetical protein - 2e-4 Atcg00500 - S.X. H.G.
0.57 84.2 PtpAffx.6054.1.S1_at CA821641 - - 7e-9 At2g12905 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.27285.1.A1_s_at CA923948 hypothetical protein - 9e-58 At1g80670 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.29 50.5 Ptp.6512.1.S1_s_at CK112728 - - 2e-92 Atcg00790 - S.X. H.G.
0.29 50.5 PtpAffx.216450.1.S1_s_at pmrna31230 hypothetical protein - 2e-4 Atcg00500 - S.X. H.G.
0.22 38.3 PtpAffx.28247.1.A1_at CV243278 hypothetical protein - 2e-65 At3g23940 dehydratase family S.X. H.G.
0.15 25.3 PtpAffx.121047.1.A1_at CV256059 hypothetical protein - 2e-15 At1g03687 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 95.3 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3 93.7 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7 91.8 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1 88.6 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 1061 PtpAffx.216450.1.S1_s_at pmrna31230 hypothetical protein - 2e-4 Atcg00500 - C.G. S.X.
0.57 0 680 PtpAffx.6054.1.S1_at CA821641 - - 7e-9 At2g12905 unknown protein C.G. S.X.
0.06 7e-26 119 PtpAffx.216075.1.S1_at pmrna30638 - - 4e-42 Atcg00500 - C.G. S.X.
0.02 6e-2 40 Ptp.2799.1.S1_at BU874348 hypothetical protein - 3e-20 At5g47890 NADH-ubiquinone oxidoreductase B8 subunit, putative C.G. S.X.
0.02 2e-1 38 Ptp.1726.1.S1_a_at CK093278 hypothetical protein /// f-box family protein - 8e-15 At5g43190 F-box family protein (FBX6) C.G. S.X.
0.02 9e-1 36 PtpAffx.5022.1.A1_at CV239537 - - 3e-8 At3g46450 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.02 9e-1 36 PtpAffx.205033.1.S1_at pmrna9971 hypothetical protein - 1e-104 Atcg00280 - C.G. S.X.
0.03 9e-1 36 PtpAffx.106209.1.A1_at DN493000 - - 3e-1 At4g28775 unknown protein C.G. S.X.
0.02 3e+0 34 PtpAffx.21140.1.S1_at DN495906 hypothetical protein - 7e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-4 48 Arabidopsis thaliana Atcg00500 - - Encodes the carboxytransferase beta subunit of the Acetyl-CoA carboxylase (ACCase) complex in plastids. This complex catalyzes the carboxylation of acetyl-CoA to produce malonyl-CoA, the first committed step in fatty acid synthesis. - - - C.G. S.X.
0.14 2e-51 204 Glycine max GmaAffx.2207.1.S1_at CD416658 - - 2e-78 Atcg00360 - C.G. S.X.
0.05 5e-3 42 Hordeum vulgare HVSMEb0007O01f_at HVSMEb0007O01f - - 1e-12 Atcg00280 - C.G. S.X.
0.13 7e-36 153 Oryza sativa Os10g0357200 X15901.1 - - 4e-108 Atcg00360 - C.G. S.X.
0.16 1e-42 174 Triticum aestivum TaAffx.27824.1.S1_at CA669852 - - 3e+0 At5g08400 unknown protein C.G. S.X.
0.16 9e-59 226 Vitis vinifera 1612048_at CD798427 - - 0 Atcg00380 - C.G. S.X.
0.13 2e-29 129 Zea mays ZmAffx.1456.1.S1_at 11990232-23 Photosystem I assembly protein ycf3 - 2e-116 Atcg00360 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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