CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.216324.1.S1_x_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.216324.1.S1_x_at pmrna31034 hypothetical protein - 4e+0 At4g05553 zinc knuckle (CCHC-type) family protein S.X. H.G.
0.77 94.9 PtpAffx.7770.2.S1_at DN488472 - - 6e+0 At4g12090 cornichon family protein S.X. H.G.
0.77 94.9 Ptp.3447.1.A1_at DN492951 - - 2e+0 At3g06000 leucine-rich repeat family protein S.X. H.G.
0.63 88.1 PtpAffx.144822.1.S1_at DN500556 - - 1e+0 At5g66650 unknown protein S.X. H.G.
0.59 84.9 PtpAffx.214797.1.S1_at pmrna28647 hypothetical protein - 3e-34 At5g13650 elongation factor family protein S.X. H.G.
0.44 71.9 PtpAffx.7770.1.A1_at CA934754 - - 4e+0 At1g58460 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.9 100.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
14.2 99.5 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
13.8 99.4 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.1 78.0 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.9 74.2 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.1 42.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 9e-147 519 PtpAffx.221865.1.S1_at pmrna38958 hypothetical protein - 1e+1 At4g28340 unknown protein C.G. S.X.
0.37 6e-111 400 PtpAffx.216336.1.S1_x_at pmrna31050 hypothetical protein - 6e+0 At3g17400 F-box family protein C.G. S.X.
0.46 3e-66 252 PtpAffx.218022.1.S1_x_at pmrna33525 hypothetical protein - 1e+1 At3g54680 proteophosphoglycan-related C.G. S.X.
0.18 1e-41 171 PtpAffx.215061.1.S1_at pmrna29020 hypothetical protein - 1e+0 At5g08480 VQ motif-containing protein C.G. S.X.
0.43 6e-40 165 PtpAffx.223457.1.S1_at pmrna41479 hypothetical protein - 8e+0 At4g26730 methyltransferase C.G. S.X.
0.35 2e-34 147 PtpAffx.222294.1.S1_x_at pmrna39611 hypothetical protein - 2e+0 At1g23260 MMZ1 (MMS ZWEI HOMOLOGUE 1) C.G. S.X.
0.11 3e-29 129 PtpAffx.210340.1.S1_at pmrna20334 hypothetical protein - 7e-3 At5g37550 unknown protein C.G. S.X.
0.07 8e-21 101 PtpAffx.212326.1.S1_at pmrna24170 hypothetical protein - 4e-1 At2g21530 forkhead-associated domain-containing protein / FHA domain-containing protein C.G. S.X.
0.22 1e-13 77 PtpAffx.219092.1.S1_at pmrna34909 hypothetical protein - 3e+0 At4g26200 ACS7 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Arabidopsis thaliana At4g05553 825908 zinc knuckle (CCHC-type) family protein F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 6e+0 32 Glycine max Gma.6393.1.S1_at BU551042 - - 1e-6 At5g53000 TAP46 (2A phosphatase associated protein of 46 kD) C.G. S.X.
0.03 3e+1 28 Hordeum vulgare HF17H18r_s_at HF17H18r - - 3e+0 At4g03410 peroxisomal membrane protein-related C.G. S.X.
0.02 1e-1 38 Oryza sativa Os03g0774200 AK119532.1 - NADH-ubiquinone oxidoreductase subunit 8 (EC1.6.5.3) 2e-71 At1g79010 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.112472.1.S1_at CA623673 - - 5e-1 At3g20970 NFU4 C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1612123_at BQ799342 hypothetical protein LOC100241410 - 3e-1 At1g14410 WHY1 (WHIRLY 1) C.G. S.X.
0.03 7e+0 30 Zea mays Zm.15640.1.A1_at BM075602 hypothetical protein LOC100280329 - 1e+0 At2g10560 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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