Gene omics information

Query gene ID	PtpAffx.216226.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.216226.1.S1_at	pmrna30877	hypothetical protein	-	6e-16	At2g01021	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.6512.1.S1_s_at	CK112728	-	-	2e-92	Atcg00790	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.1980.1.S1_a_at	CV250106	hypothetical protein	-	3e-4	At4g27380	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.30207.1.S1_s_at	CV257448	hypothetical protein	-	2e-61	At3g11730	ATFP8	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.11488.1.S1_at	CV244200	hypothetical protein	-	6e-49	At4g31720	TAFII15 (TBP-ASSOCIATED FACTOR II 15)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.5675.3.A1_a_at	CV239389	hypothetical protein	-	8e-2	At1g10590	DNA-binding protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.215548.1.S1_x_at	pmrna29808	hypothetical protein	-	9e-74	Atcg00670	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	9e-136	482	PtpAffx.250003.1.S1_s_at	19919559	-	-	8e-15	At2g01021	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	32	PtpAffx.27652.1.S1_at	DN491785	hypothetical protein	-	1e-6	At4g20050	QRT3 (QUARTET 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	32	PtpAffx.225303.1.S1_at	pmrna44556	hypothetical protein	-	2e-4	At4g34135	UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e+0	32	PtpAffx.213181.1.S1_at	pmrna25789	hypothetical protein	-	1e+0	At1g54410	dehydrin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	32	PtpAffx.210906.1.S1_at	pmrna21427	hypothetical protein	-	1e-1	At2g40860	protein kinase family protein / protein phosphatase 2C ( PP2C) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+1	30	PtpAffx.37731.1.A1_at	CV241146	hypothetical protein	-	1e+0	At3g61530	PANB2	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+1	30	PtpAffx.249.394.A1_at	CV229081	-	-	4e-2	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+1	30	PtpAffx.223567.1.S1_at	pmrna41623	hypothetical protein	-	7e-1	At1g77790	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+1	30	PtpAffx.223477.1.S1_at	pmrna41506	hypothetical protein	-	9e+0	At5g62930	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	6e-16	83	Arabidopsis thaliana	At2g01021	6241266	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	4e-42	171	Glycine max	PsAffx.psHB005xL12f_at	PsAffx.psHB005xL12f	-	-	9e-8	At2g01021	unknown protein	C.G.	S.X.	Please select
0.05	3e-28	123	Hordeum vulgare	Contig711_s_at	Contig711	-	-	3e-2	At5g53590	auxin-responsive family protein	C.G.	S.X.	Please select
0.14	9e-35	147	Oryza sativa	OsAffx.27508.100.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	2e-16	85	Triticum aestivum	Ta.7812.2.A1_at	BE517024	-	-	1e+1	At5g10300	MES5 (METHYL ESTERASE 5)	C.G.	S.X.	Please select
0.04	9e+0	28	Vitis vinifera	1621640_at	AY427079.1	hypothetical protein LOC100264978	-	2e-1	At1g12220	RPS5 (RESISTANT TO P. SYRINGAE 5)	C.G.	S.X.	Please select
0.07	1e-33	141	Zea mays	ZmAffx.1214.1.S1_s_at	13397940	hypothetical protein LOC100192494 /// hypothetical protein LOC100275739	-	7e-3	At2g01021	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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