CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.216154.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.43 69.7 PtpAffx.216154.1.S1_at pmrna30765 hypothetical protein - 5e-2 At1g14900 HMGA (HIGH MOBILITY GROUP A) S.X. H.G.
0.33 57.5 PtpAffx.2091.1.A1_at CK088284 hypothetical protein - 3e+0 At5g44060 unknown protein S.X. H.G.
0.07 11.6 PtpAffx.211210.1.S1_at pmrna22025 hypothetical protein - 3e+0 At3g55820 - S.X. H.G.
0.04 6.9 Ptp.1076.1.S1_at CK093557 - - 2e+0 At5g37670 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI) S.X. H.G.
0.03 5.2 PtpAffx.209527.1.S1_at pmrna18875 hypothetical protein - 3e-1 At4g38870 F-box family protein S.X. H.G.
0.02 3.6 PtpAffx.224027.1.S1_at pmrna42259 hypothetical protein - 4e+0 At5g19257 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.6 99.8 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
14.5 99.5 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
9.3 98.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.0 98.7 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.0 97.5 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7 96.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 40 PtpAffx.214955.1.S1_at pmrna28887 hypothetical protein - 8e+0 At5g44570 unknown protein C.G. S.X.
0.03 7e-2 38 PtpAffx.216956.1.S1_at pmrna32037 hypothetical protein - 1e+0 At1g13290 DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5) C.G. S.X.
0.04 3e-1 36 PtpAffx.223473.1.S1_at pmrna41501 hypothetical protein - 4e+0 At3g62920 unknown protein C.G. S.X.
0.04 3e-1 36 PtpAffx.220540.1.S1_at pmrna36944 hypothetical protein - 2e+1 At2g42590 GRF9 (GENERAL REGULATORY FACTOR 9) C.G. S.X.
0.04 3e-1 36 PtpAffx.106439.1.A1_at BP935171 - - 1e+0 At4g05070 unknown protein C.G. S.X.
0.03 1e+0 34 PtpAffx.3557.1.S1_at DN486149 hypothetical protein - 4e-4 At5g42680 unknown protein C.G. S.X.
0.04 1e+0 34 PtpAffx.223062.1.S1_at pmrna40858 hypothetical protein - 2e-2 At2g46960 CYP709B1 C.G. S.X.
0.03 1e+0 34 PtpAffx.219453.1.S1_at pmrna35374 hypothetical protein - 2e+1 At4g25100 FSD1 (FE SUPEROXIDE DISMUTASE 1) C.G. S.X.
0.05 1e+0 34 PtpAffx.217772.1.S1_at pmrna33168 hypothetical protein - 1e+0 At5g01700 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-2 38 Arabidopsis thaliana At1g14900 838055 HMGA (HIGH MOBILITY GROUP A) Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA. - - - C.G. S.X.
0.04 2e-2 40 Glycine max PsAffx.C66000015_at PsAffx.C66000015 - - 6e-2 At1g14900 HMGA (HIGH MOBILITY GROUP A) C.G. S.X.
0.04 1e-1 36 Hordeum vulgare Contig4808_s_at Contig4808 - - 2e-1 At1g54410 dehydrin family protein C.G. S.X.
0.05 4e-1 36 Oryza sativa Os07g0488500 9635.m02972 - - 2e+0 At5g17400 ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1) C.G. S.X.
0.04 1e-2 40 Triticum aestivum Ta.1907.1.A1_at BE446756 - - 3e-1 At3g01700 AGP11 C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1614986_at CF372413 hypothetical protein LOC100261262 - 5e-15 At5g45410 unknown protein C.G. S.X.
0.04 9e-2 36 Zea mays ZmAffx.679.1.A1_at AI734614 Hypothetical protein LOC100191777 - 5e-2 At2g36100 integral membrane family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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