Gene omics information

Query gene ID	PtpAffx.216111.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	84.9	PtpAffx.216111.1.S1_s_at	pmrna30694	hypothetical protein	-	2e+0	At2g43370	U1 small nuclear ribonucleoprotein 70 kDa, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.220532.1.S1_at	pmrna36936	hypothetical protein	-	4e-1	At4g00310	EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8)	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.108514.1.A1_at	CV237706	-	-	5e-1	At5g15390	tRNA/rRNA methyltransferase (SpoU) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.218958.1.S1_x_at	pmrna34729	hypothetical protein	-	7e+0	At5g65260	polyadenylate-binding protein family protein / PABP family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.107969.2.A1_at	CV258570	-	-	2e-2	At5g66680	DGL1	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	Ptp.1358.2.A1_at	CK092478	-	-	2e+0	At1g67740	PSBY	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.217772.1.S1_at	pmrna33168	hypothetical protein	-	1e+0	At5g01700	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.2348.1.S1_at	CK092577	hypothetical protein	-	8e-21	At3g51800	ATG2	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.216120.1.S1_s_at	pmrna30706	hypothetical protein	-	3e-3	At1g02640	BXL2 (BETA-XYLOSIDASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.221050.1.S1_x_at	pmrna37608	-	-	1e-1	At4g27590	copper-binding protein-related	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.5	99.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.7	97.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.3	97.7	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
6.1	97.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9	95.1	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	2e-4	46	PtpAffx.96568.1.S1_s_at	CV236193	UDP-galactose:flavonol 3-o-galactosyltransferase	-	6e-10	At5g17050	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-3	40	PtpAffx.200789.1.S1_at	pmrna1525	-	-	2e-1	At3g12550	XH/XS domain-containing protein / XS zinc finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	36	PtpAffx.219818.1.S1_at	pmrna35946	-	-	2e-31	At3g52870	calmodulin-binding family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	6e-1	34	PtpAffx.225078.1.S1_at	pmrna44171	hypothetical protein	-	3e+0	At5g59590	UGT76E2 (UDP-GLUCOSYL TRANSFERASE 76E2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	34	PtpAffx.201305.1.S1_at	pmrna2592	hypothetical protein	-	4e-4	At5g44080	bZIP transcription factor family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	6e-1	34	Ptp.1756.1.A1_at	CK093804	-	-	3e+0	At5g25870	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	32	PtpAffx.222730.1.S1_at	pmrna40335	hypothetical protein	-	3e-2	At4g36470	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	32	PtpAffx.210762.1.S1_at	pmrna21113	hypothetical protein	-	7e-3	At3g25130	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	2e+0	32	PtpAffx.202546.1.S1_at	pmrna5106	hypothetical protein	-	2e+0	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Arabidopsis thaliana	At2g43370	818938	U1 small nuclear ribonucleoprotein 70 kDa, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleus;MPFOBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e+0	32	Glycine max	HgAffx.21153.1.S1_at	BI749234	-	-	6e-1	At2g24340	transcription factor	C.G.	S.X.	Please select
0.06	8e-1	32	Hordeum vulgare	HS05I23r_s_at	HS05I23r	-	-	8e+0	At3g22435	XS domain-containing protein	C.G.	S.X.	Please select
0.05	8e-1	34	Oryza sativa	Os08g0199900	9636.m00956	-	-	4e+0	At5g66980	transcriptional factor B3 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	7e+0	30	Triticum aestivum	TaAffx.57792.1.S1_at	CA625098	-	-	7e+0	At5g25540	CID6 (CTC-Interacting Domain 6)	C.G.	S.X.	Please select
0.05	2e+0	30	Vitis vinifera	1610255_at	BQ800016	-	-	3e+0	At4g26570	ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3)	C.G.	S.X.	Please select
0.05	3e+0	30	Zea mays	ZmAffx.501.1.S1_at	AI691747	-	-	8e-1	At5g62100	ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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