Gene omics information

Query gene ID	PtpAffx.216110.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.3	PtpAffx.216110.1.S1_at	pmrna30693	hypothetical protein	-	2e+0	At5g46970	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.206198.1.S1_at	pmrna12307	-	-	2e-4	At1g78380	ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.222355.1.S1_at	pmrna39704	hypothetical protein	-	2e-2	At4g17215	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.200693.1.S1_at	pmrna1341	-	-	2e+0	At3g51030	ATTRX1	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.223275.1.S1_s_at	pmrna41192	hypothetical protein	-	2e-43	At1g10320	U2 snRNP auxiliary factor-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.223698.1.S1_at	pmrna41832	hypothetical protein	-	9e+0	At1g07485	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.215678.1.S1_at	pmrna30024	hypothetical protein	-	3e-1	At4g25220	transporter, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.215904.1.S1_at	pmrna30367	hypothetical protein	-	5e-3	At1g03510	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.143705.3.S1_at	CV276918	-	-	3e-20	At1g67230	LINC1 (LITTLE NUCLEI1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.56113.1.A1_at	CV277642	-	-	4e-1	At1g09180	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.5	99.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.6	98.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.4	95.9	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.2	95.6	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	PtpAffx.222485.1.S1_at	pmrna39944	hypothetical protein	-	1e-2	At3g46510	PUB13 (PLANT U-BOX 13)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	36	PtpAffx.210905.1.S1_at	pmrna21422	hypothetical protein	-	1e-1	At3g62900	zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	36	Ptp.1890.1.S1_at	CV263640	hypothetical protein	-	1e-163	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	6e-1	34	PtpAffx.83045.1.S1_at	CK107120	hypothetical protein	-	3e-13	At1g10760	SEX1 (STARCH EXCESS 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	34	PtpAffx.7300.1.S1_at	CK091663	hypothetical protein	-	4e-21	At5g44600	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	6e-1	34	PtpAffx.212054.1.S1_at	pmrna23657	-	-	3e-20	Atcg00040	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	32	PtpAffx.222775.1.S1_at	pmrna40419	hypothetical protein	-	3e-3	At5g17050	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	32	PtpAffx.214116.1.S1_at	pmrna27477	hypothetical protein	-	1e-12	At5g25840	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	32	PtpAffx.212323.1.S1_at	pmrna24164	hypothetical protein	-	2e-12	At4g10020	AtHSD5 (hydroxysteroid dehydrogenase 5)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	Arabidopsis thaliana	At5g46970	834743	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	6e-4	44	Glycine max	GmaAffx.63919.1.S1_at	CA782188	-	-	2e-2	At5g57000	unknown protein	C.G.	S.X.	Please select
0.05	8e-1	32	Hordeum vulgare	HU10O11u_at	HU10O11u	-	-	8e-1	At4g00650	FRI (FRIGIDA)	C.G.	S.X.	Please select
0.06	1e-2	40	Oryza sativa	OsAffx.10906.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	4e-1	34	Triticum aestivum	Ta.29441.3.S1_at	BJ271408	-	-	1e+0	At1g49310	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	30	Vitis vinifera	1620885_at	CF208822	-	-	4e+0	At5g44572	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	34	Zea mays	Zm.1465.1.A1_at	BG840947	-	-	7e-6	At3g21110	PUR7 (PURIN 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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