Gene omics information

Query gene ID	PtpAffx.215976.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.215976.1.S1_at	pmrna30470	hypothetical protein	-	4e-25	At3g07330	ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.63346.1.A1_at	CV243969	-	-	2e-2	At1g10150	carbohydrate binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.218062.1.S1_s_at	pmrna33582	hypothetical protein	-	7e-1	At2g34420	LHB1B2	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.7473.2.S1_at	CV237958	hypothetical protein	-	1e+0	At2g05803	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.134623.1.A1_at	CV228876	-	-	2e+0	At5g39870	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.249.605.A1_at	CV276304	-	-	4e-4	At1g14900	HMGA (HIGH MOBILITY GROUP A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.208855.1.S1_at	pmrna17554	hypothetical protein	-	2e-1	At1g80910	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.1	99.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.4	98.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	1025	PtpAffx.212010.1.S1_s_at	pmrna23583	hypothetical protein	-	2e-5	At3g07330	ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	8e-86	317	PtpAffx.153929.1.A1_at	CV237091	hypothetical protein	-	2e-6	At3g07330	ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-6	54	PtpAffx.214284.1.S1_at	pmrna27785	hypothetical protein	-	2e-175	At4g31590	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	7e-6	52	PtpAffx.205392.1.S1_at	pmrna10679	hypothetical protein	-	3e-81	At4g07960	ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-5	50	PtpAffx.206862.1.S1_s_at	pmrna13628	hypothetical protein	-	2e-162	At4g31590	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	38	PtpAffx.204814.1.S1_x_at	pmrna9494	hypothetical protein	-	4e-49	At2g26800	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	38	PtpAffx.204814.1.S1_at	pmrna9494	hypothetical protein	-	4e-49	At2g26800	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	Ptp.1629.1.A1_s_at	CK092379	hypothetical protein	-	3e-17	At2g26800	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.79403.1.S1_at	BU820351	hypothetical protein	-	4e+0	At5g23180	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	4e-25	115	Arabidopsis thaliana	At3g07330	819921	ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)	encodes a gene similar to cellulose synthase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.40	5e-44	178	Glycine max	Gma.9984.1.S1_at	AW733987	-	-	2e-38	At3g07330	ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)	C.G.	S.X.	Please select
0.12	7e-10	63	Hordeum vulgare	Contig7539_s_at	Contig7539	-	-	3e-13	At4g07960	ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12)	C.G.	S.X.	Please select
0.11	5e-14	79	Oryza sativa	Os05g0510800	BI812378	-	Hypothetical protein	1e-7	At3g07330	ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	9e-8	57	Triticum aestivum	Ta.26183.1.A1_at	CD452591	-	-	9e-15	At2g24630	ATCSLC08	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1615739_s_at	CD802283	hypothetical protein LOC100259425	-	4e+0	At5g08300	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	C.G.	S.X.	Please select
0.17	2e-10	65	Zea mays	Zm.3030.1.A1_at	CA402193	-	-	2e-12	At4g31590	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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