Gene omics information

Query gene ID	PtpAffx.215954.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.215954.1.S1_at	pmrna30436	hypothetical protein	-	9e-13	At3g21430	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.201755.1.S1_at	pmrna3499	hypothetical protein	-	2e-99	At1g06490	ATGSL07 (glucan synthase-like 7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.2257.1.S1_x_at	AY594298.1	hypothetical protein	-	1e-5	At3g09390	MT2A (METALLOTHIONEIN 2A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.2257.3.S1_x_at	CV278949	hypothetical protein	-	8e-6	At3g09390	MT2A (METALLOTHIONEIN 2A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	Ptp.3677.1.S1_s_at	CV255022	hypothetical protein	-	0	Atcg00900	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.206176.1.S1_at	pmrna12263	hypothetical protein	-	1e-17	At4g29890	choline monooxygenase, putative (CMO-like)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	97.6	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	2e-101	369	PtpAffx.208551.1.S1_at	pmrna16968	hypothetical protein	-	2e-13	At3g21430	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	2e-11	69	PtpAffx.225470.1.S1_s_at	pmrna44837	hypothetical protein	-	2e-8	At5g27610	DNA binding / transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	2e-11	69	PtpAffx.225470.1.S1_at	pmrna44837	hypothetical protein	-	2e-8	At5g27610	DNA binding / transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	2e-11	69	PtpAffx.215989.1.S1_at	pmrna30485	hypothetical protein	-	1e-7	At3g05380	DNA binding / transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	3e-7	56	PtpAffx.215988.1.S1_at	pmrna30484	hypothetical protein	-	1e+0	At5g50090	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	8e-5	48	PtpAffx.224829.1.S1_at	pmrna43703	hypothetical protein	-	2e-12	At3g05380	DNA binding / transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.87901.1.A1_at	CV244653	hypothetical protein	-	1e-25	At2g11000	ATMAK10	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.29092.1.A1_at	DN489128	hypothetical protein	-	7e-65	At3g48540	cytidine/deoxycytidylate deaminase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.210703.1.S1_at	pmrna20994	hypothetical protein	-	8e-4	At5g50990	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	9e-13	73	Arabidopsis thaliana	At3g21430	821697	-	-	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.psMA003xE14f_at	PsAffx.psMA003xE14f	-	-	4e+0	At4g18920	unknown protein	C.G.	S.X.	Please select
0.05	2e+0	32	Hordeum vulgare	Contig22359_at	Contig22359	-	-	7e-2	At5g04260	WCRKC2 (WCRKC THIOREDOXIN 2)	C.G.	S.X.	Please select
0.03	1e-1	38	Oryza sativa	Os.24469.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	32	Triticum aestivum	TaAffx.29451.1.S1_at	CA642606	-	-	1e+0	At3g30210	MYB121 (MYB DOMAIN PROTEIN 121)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1617478_at	BQ792138	-	-	3e+0	At4g09467	-	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	Zm.3689.1.A1_at	AW042272	-	-	5e-2	At5g28770	BZO2H3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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