CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.215859.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.43 69.7 PtpAffx.215859.1.S1_s_at pmrna30283 hypothetical protein - 2e+0 At2g39435 unknown protein S.X. H.G.
0.36 61.6 PtpAffx.203937.1.S1_at pmrna7767 hypothetical protein - 3e+0 At1g56210 copper chaperone (CCH)-related S.X. H.G.
0.36 61.6 PtpAffx.59304.1.A1_at AJ772233 - - 2e-17 At2g36830 GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) S.X. H.G.
0.17 29.1 PtpAffx.222184.1.S1_at pmrna39436 hypothetical protein - 3e-3 At4g27680 MSP1 protein, putative / intramitochondrial sorting protein, putative S.X. H.G.
0.15 25.3 PtpAffx.216337.1.S1_at pmrna31051 hypothetical protein - 5e-1 At1g05650 polygalacturonase, putative / pectinase, putative S.X. H.G.
0.12 19.6 PtpAffx.203897.1.S1_at pmrna7697 hypothetical protein - 3e-1 At2g33793 unknown protein S.X. H.G.
0.07 11.6 PtpAffx.206077.1.S1_s_at pmrna12042 - - 9e-12 Atcg01050 - S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.9 99.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
11.1 99.1 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.4 98.6 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.4 97.0 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3 89.8 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 4e-42 171 PtpAffx.218549.1.S1_at pmrna34209 hypothetical protein - 5e-1 At3g08640 alphavirus core protein family C.G. S.X.
0.03 4e-2 38 Ptp.4066.1.S1_at CV234488 hypothetical protein - 6e-1 At1g74950 TIFY10B C.G. S.X.
0.04 1e-1 36 PtpAffx.127755.1.A1_at BU832234 hypothetical protein - 2e+0 At5g54000 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.01 6e-1 34 PtpAffx.211779.1.S1_at pmrna23108 dehydroquinate dehydratase/ shikimate dehydrogenase - 3e-1 At1g78070 - C.G. S.X.
0.04 6e-1 34 PtpAffx.209034.1.S1_at pmrna17888 hypothetical protein - 3e-1 At1g10480 ZFP5 (ZINC FINGER PROTEIN 5) C.G. S.X.
0.04 2e+0 32 PtpAffx.77365.1.S1_at CV245095 hypothetical protein - 6e-10 At5g21920 YGGT family protein C.G. S.X.
0.02 2e+0 32 PtpAffx.6001.1.S1_at CV237297 hypothetical protein - 3e-43 At2g28000 CPN60A (CHAPERONIN-60ALPHA) C.G. S.X.
0.01 2e+0 32 PtpAffx.204503.1.S1_at pmrna8837 hypothetical protein - 2e-7 At4g38440 - C.G. S.X.
0.04 2e+0 32 PtpAffx.157025.1.S1_at CK107493 - - 6e-15 At5g18930 BUD2 (BUSHY AND DWARF 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 32 Arabidopsis thaliana At2g39435 6241019 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF - - - C.G. S.X.
0.05 6e-1 34 Glycine max GmaAffx.87175.1.S1_at BM143872 - - 1e+1 At5g28660 - C.G. S.X.
0.06 3e+0 30 Hordeum vulgare EBpi01_SQ002_J11_at EBpi01_SQ002_J11 - - 3e+0 At4g10595 LCR2 (Low-molecular-weight cysteine-rich 2) C.G. S.X.
0.04 3e+0 32 Oryza sativa OsAffx.15036.1.S1_at - - - 0 C.G. S.X.
0.06 2e+0 32 Triticum aestivum Ta.15549.1.S1_at CA485434 - - 2e+0 At3g26742 unknown protein C.G. S.X.
0.03 2e+0 30 Vitis vinifera 1612294_at CB979426 hypothetical protein LOC100241933 - 1e+0 At2g27370 integral membrane family protein C.G. S.X.
0.03 7e-1 32 Zea mays Zm.5801.1.A1_at AY111239.1 hypothetical protein LOC100275802 - 6e-3 At5g12470 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage