CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.215660.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.215660.1.S1_s_at pmrna29980 hypothetical protein - 1e-64 At4g12400 stress-inducible protein, putative S.X. H.G.
0.37 62.3 PtpAffx.157569.1.S1_s_at CF231935 hypothetical protein - 2e-21 At1g05055 GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) S.X. H.G.
0.36 61.6 PtpAffx.13741.2.S1_s_at AJ772879 hypothetical protein - 2e-3 At3g25110 AtFaTA (Arabidopsis FatA acyl-ACP thioesterase) S.X. H.G.
0.36 61.6 Ptp.2255.1.S1_at CK088274 hypothetical protein - 5e-29 At5g63000 unknown protein S.X. H.G.
0.35 59.7 PtpAffx.16931.2.S1_a_at BI069779 hypothetical protein - 2e-6 At5g59460 scarecrow-like transcription factor 11 (SCL11) S.X. H.G.
0.34 58.3 PtpAffx.200343.1.S1_s_at pmrna678 hypothetical protein - 1e-64 At4g10760 MTA (MRNA ADENOSINE METHYLASE) S.X. H.G.
0.32 55.2 Ptp.5898.1.S1_s_at CN523666 hypothetical protein - 0 At5g49910 CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2) S.X. H.G.
0.31 53.7 PtpAffx.209086.1.S1_at pmrna17974 hypothetical protein - 2e-29 At5g49580 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.28 50.5 Ptp.7847.1.S1_s_at CN523919 hypothetical protein - 4e-7 At3g22680 unknown protein S.X. H.G.
0.27 47.1 PtpAffx.9494.1.S1_at DN491329 hypothetical protein - 1e-26 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.7 94.7 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM362884 Clone1979_LPI2_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0 92.9 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 0 732 PtpAffx.4168.2.S1_s_at BU890490 hypothetical protein - 8e-56 At4g12400 stress-inducible protein, putative C.G. S.X.
0.45 8e-141 502 PtpAffx.4168.3.A1_at CV234277 - - 2e-12 At4g12400 stress-inducible protein, putative C.G. S.X.
0.04 1e-6 56 PtpAffx.20340.1.A1_at CK089685 - - 3e+0 At1g51150 DegP6 (DegP protease 6) C.G. S.X.
0.01 2e-2 42 PtpAffx.149869.1.S1_at DN493835 hypothetical protein - 5e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.01 3e-1 38 PtpAffx.212357.1.S1_at pmrna24223 hypothetical protein - 3e-23 At1g35460 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.01 3e-1 38 PtpAffx.210504.1.S1_at pmrna20605 hypothetical protein - 7e-7 At5g61370 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 3e-1 38 PtpAffx.200669.1.S1_at pmrna1300 - - 1e-48 At3g45890 RUS1 (ROOT UVB SENSITIVE 1) C.G. S.X.
0.01 3e-1 38 PtpAffx.15778.1.S1_at CV236739 - - 3e-17 At1g47655 Dof-type zinc finger domain-containing protein C.G. S.X.
0.01 3e-1 38 PtpAffx.150004.1.S1_s_at BU883888 hypothetical protein - 8e-2 At4g12500 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 1e-64 248 Arabidopsis thaliana At4g12400 826849 stress-inducible protein, putative F:binding;P:response to high light intensity, response to hydrogen peroxide, response to heat, response to stress;C:cellular_component unknown;OBMPFAV - - - C.G. S.X.
0.37 2e-101 371 Glycine max Gma.8435.1.S1_at X79770.1 stress inducible protein - 1e-61 At1g62740 stress-inducible protein, putative C.G. S.X.
0.39 2e-37 157 Hordeum vulgare Contig7425_at Contig7425 - - 2e-41 At1g62740 stress-inducible protein, putative C.G. S.X.
0.26 4e-23 111 Oryza sativa Os.16317.1.S1_at - - - 0 C.G. S.X.
0.25 1e-18 95 Triticum aestivum Ta.8679.1.S1_x_at CK157404 - - 1e-9 At1g62740 stress-inducible protein, putative C.G. S.X.
0.42 6e-141 500 Vitis vinifera 1618545_a_at CB346750 hypothetical LOC100265979 - 2e-50 At1g12270 stress-inducible protein, putative C.G. S.X.
0.27 4e-26 119 Zea mays Zm.2497.1.S1_at AY107480.1 hypothetical protein LOC100272917 - 3e-55 At4g12400 stress-inducible protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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