CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.215590.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.215590.1.S1_at pmrna29872 hypothetical protein - 9e-1 At3g20260 structural constituent of ribosome S.X. H.G.
0.33 57.5 PtpAffx.3128.1.S1_at DN493238 - - 6e+0 At3g19085 - S.X. H.G.
0.20 34.6 PtpAffx.223876.1.S1_at pmrna42096 hypothetical protein - 2e+0 At2g34820 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.15 25.3 PtpAffx.225251.1.S1_at pmrna44467 hypothetical protein - 3e-3 At5g44360 FAD-binding domain-containing protein S.X. H.G.
0.03 5.2 PtpAffx.218672.1.S1_at pmrna34376 hypothetical protein - 3e-1 At1g66380 MYB114 (myb domain protein 114) S.X. H.G.
0.02 3.6 PtpAffx.210988.1.S1_at pmrna21579 hypothetical protein - 1e-1 At4g00820 iqd17 (IQ-domain 17) S.X. H.G.
0.02 3.6 PtpAffx.209395.1.S1_at pmrna18610 hypothetical protein - 2e+0 At2g28900 ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.4 99.7 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
11.4 99.2 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
11.0 99.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.5 98.8 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.6 97.2 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.8 96.4 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9 95.1 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7 94.7 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0 92.9 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 36 PtpAffx.65481.1.S1_at CB239654 hypothetical protein - 2e-1 At3g11650 NHL2 C.G. S.X.
0.02 3e-1 36 PtpAffx.25457.1.S1_at CV269343 - - 8e-19 At4g17486 unknown protein C.G. S.X.
0.02 3e-1 36 PtpAffx.224642.1.S1_s_at pmrna43384 hypothetical protein - 3e-3 At3g22670 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 3e-1 36 PtpAffx.224642.1.S1_at pmrna43384 hypothetical protein - 3e-3 At3g22670 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.03 1e+0 34 PtpAffx.68177.1.A1_s_at CX658713 hypothetical protein - 2e-3 At4g01590 unknown protein C.G. S.X.
0.01 1e+0 34 PtpAffx.220005.1.S1_at pmrna36240 hypothetical protein - 1e-68 At5g41150 UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) C.G. S.X.
0.01 1e+0 34 PtpAffx.208448.1.S1_at pmrna16781 cation proton exchanger - 1e-12 At3g17630 ATCHX19 (CATION/H+ EXCHANGER 19) C.G. S.X.
0.01 1e+0 34 PtpAffx.208441.1.S1_at pmrna16773 cation proton exchanger - 3e-13 At3g17630 ATCHX19 (CATION/H+ EXCHANGER 19) C.G. S.X.
0.01 1e+0 34 PtpAffx.208441.1.S1_s_at pmrna16773 cation proton exchanger /// cation proton exchanger - 3e-13 At3g17630 ATCHX19 (CATION/H+ EXCHANGER 19) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 9e-1 34 Arabidopsis thaliana At3g20260 821570 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;MOPFVB - - - C.G. S.X.
0.08 1e+0 34 Glycine max GmaAffx.78088.1.S1_at BU927503 - - 2e-18 At3g20260 structural constituent of ribosome C.G. S.X.
0.04 1e-1 36 Hordeum vulgare Contig23117_at Contig23117 - - 5e+0 At3g54040 photoassimilate-responsive protein-related C.G. S.X.
0.03 4e-1 36 Oryza sativa Os08g0542100 AK058490.1 - Ribosomal protein L30 family protein 5e-1 At5g10040 unknown protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum Ta.25866.1.A1_at CD453651 - - 2e-2 At1g23800 ALDH2B7 C.G. S.X.
0.03 3e-1 34 Vitis vinifera 1616066_at CF214739 similar to Protein C6orf115, putative - 4e+0 At2g43760 molybdopterin biosynthesis MoaE family protein C.G. S.X.
0.04 1e-1 36 Zea mays Zm.7512.1.A1_x_at CF062696 - - 2e-7 At3g20260 structural constituent of ribosome C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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