CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.215544.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.215544.1.S1_at pmrna29803 hypothetical protein - 5e-1 At5g12360 unknown protein S.X. H.G.
0.35 59.7 PtpAffx.224865.1.S1_at pmrna43750 hypothetical protein - 7e-14 At1g03540 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.32 55.2 Ptp.1591.1.S1_at CV267457 hypothetical protein - 3e-24 At3g51260 PAD1 (20s proteasome alpha subunit pad1) S.X. H.G.
0.29 50.5 PtpAffx.3566.2.S1_at DN485687 hypothetical protein - 5e-16 At1g09760 U2A' (U2 small nuclear ribonucleoprotein A) S.X. H.G.
0.19 32.7 Ptp.3943.1.S1_at CV250102 hypothetical protein - 5e-8 At5g43960 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein S.X. H.G.
0.14 23.5 PtpAffx.133902.1.A1_at CV243404 hypothetical protein - 1e+0 At2g36110 3'-5' exonuclease domain-containing protein S.X. H.G.
0.07 11.6 Ptp.2085.2.S1_s_at CF231740 hypothetical protein - 2e-30 At1g22300 GRF10 (GENERAL REGULATORY FACTOR 10) S.X. H.G.
0.03 5.2 PtpAffx.210307.1.S1_at pmrna20282 hypothetical protein - 1e-3 At3g49400 transducin family protein / WD-40 repeat family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.9 99.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.5 97.8 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4 94.0 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4 90.4 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 40 PtpAffx.217423.1.S1_at pmrna32676 hypothetical protein - 1e+1 At2g30120 unknown protein C.G. S.X.
0.04 2e-1 38 PtpAffx.215554.1.S1_at pmrna29814 hypothetical protein - 7e+0 Atcg00360 - C.G. S.X.
0.03 7e-1 36 PtpAffx.220482.1.S1_at pmrna36875 hypothetical protein - 4e+0 At2g21280 SULA C.G. S.X.
0.01 7e-1 36 PtpAffx.219414.1.S1_at pmrna35335 - - 2e-1 At1g32630 unknown protein C.G. S.X.
0.02 7e-1 36 PtpAffx.217809.1.S1_at pmrna33217 hypothetical protein - 3e-1 At1g79870 oxidoreductase family protein C.G. S.X.
0.02 7e-1 36 PtpAffx.214980.1.S1_at pmrna28915 hypothetical protein - 8e+0 At4g15610 integral membrane family protein C.G. S.X.
0.03 3e+0 34 PtpAffx.223699.1.S1_at pmrna41833 hypothetical protein - 3e+0 At1g76980 - C.G. S.X.
0.01 3e+0 34 PtpAffx.223627.1.S1_at pmrna41706 hypothetical protein - 3e+0 At5g07560 GRP20 (GLYCINE-RICH PROTEIN 20) C.G. S.X.
0.02 3e+0 34 PtpAffx.223623.1.S1_at pmrna41694 hypothetical protein - 9e+0 At3g43722 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Arabidopsis thaliana At5g12360 831111 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.02 3e+0 34 Glycine max PsAffx.psZS003xK12f_at PsAffx.psZS003xK12f - - 7e-2 At5g28490 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig21713_at Contig21713 - - 1e+0 At3g06050 PRXIIF (PEROXIREDOXIN IIF) C.G. S.X.
0.02 6e-2 40 Oryza sativa OsAffx.28716.1.S1_s_at - - - 0 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.56232.1.S1_at CA655525 - - 4e+0 At4g39970 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.03 9e+0 30 Vitis vinifera 1620137_s_at CB911784 hypothetical protein LOC100260466 - 3e+0 At3g20510 unknown protein C.G. S.X.
0.02 1e-2 40 Zea mays Zm.1912.1.A1_at CO519819 hypothetical protein LOC100274020 - 4e-1 At4g10170 synaptobrevin-related family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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