CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.215449.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.215449.1.S1_at pmrna29652 hypothetical protein - 4e-1 At4g03620 myosin heavy chain-related S.X. H.G.
0.67 91.1 PtpAffx.112163.1.S1_at CV243866 hypothetical protein - 1e+0 At3g17160 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.207865.1.S1_at pmrna15613 hypothetical protein - 9e-1 At5g15290 integral membrane family protein S.X. H.G.
0.50 78.6 PtpAffx.102128.1.A1_at CV236844 hypothetical protein - 1e-7 At5g03700 PAN domain-containing protein S.X. H.G.
0.47 74.6 Ptp.3805.1.S1_at CV274329 hypothetical protein - 2e-56 At5g62740 band 7 family protein S.X. H.G.
0.22 38.3 PtpAffx.220022.1.S1_s_at pmrna36269 hypothetical protein - 2e+0 At1g53610 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.6 99.8 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
18.9 99.7 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
17.2 99.6 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.0 98.4 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.6 97.2 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.9 96.5 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.1 78.0 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.0 76.2 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.8 72.0 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.55 0 704 PtpAffx.203915.1.S1_at pmrna7729 hypothetical protein - 4e-6 At1g13340 unknown protein C.G. S.X.
0.02 6e-1 36 PtpAffx.25342.1.S1_at AJ770781 white-brown-complex ABC transporter family - 2e-103 At2g01320 ABC transporter family protein C.G. S.X.
0.01 6e-1 36 PtpAffx.224157.1.S1_at pmrna42430 pleiotropic drug resistance, ABC transporter family protein - 8e-31 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.01 6e-1 36 PtpAffx.212516.1.S1_at pmrna24511 hypothetical protein - 1e+0 At4g04840 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
0.02 6e-1 36 PtpAffx.210669.1.S1_x_at pmrna20922 - - 1e-22 At5g50740 metal ion binding C.G. S.X.
0.02 6e-1 36 PtpAffx.210669.1.S1_at pmrna20922 - - 1e-22 At5g50740 metal ion binding C.G. S.X.
0.02 6e-1 36 PtpAffx.202561.1.S1_at pmrna5133 hypothetical protein - 1e-8 At5g16610 unknown protein C.G. S.X.
0.03 6e-1 36 PtpAffx.159758.1.A1_at CV260202 - - 4e+0 At1g01130 unknown protein C.G. S.X.
0.02 6e-1 36 PtpAffx.145486.1.S1_at CF233002 hypothetical protein - 1e+0 At1g47310 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 36 Arabidopsis thaliana At4g03620 825662 myosin heavy chain-related F:molecular_function unknown;P:response to cyclopentenone;C:unknown;MOFBPAV - - - C.G. S.X.
0.07 4e-2 40 Glycine max GmaAffx.6519.1.S1_at BI701341 - - 2e-8 At1g13340 unknown protein C.G. S.X.
0.03 8e-1 34 Hordeum vulgare HV_CEb0017B21r2_at HV_CEb0017B21r2 - - 3e+0 Atmg00990 - C.G. S.X.
0.02 2e-1 38 Oryza sativa Os12g0569400 9640.m03709 - - 7e+0 Atcg00420 - C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.8343.1.S1_at CA626916 - - 2e+0 At3g15300 VQ motif-containing protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1621847_at CF202726.1 hypothetical protein LOC100267426 - 4e+0 At4g17310 unknown protein C.G. S.X.
0.03 3e+0 32 Zea mays Zm.9371.3.A1_x_at BM333622 hypothetical protein LOC100275410 - 1e+0 At1g53160 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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