Gene omics information

Query gene ID PtpAffx.215449.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.215449.1.S1_atpmrna29652hypothetical protein-4e-1At4g03620myosin heavy chain-relatedS.X.H.G.
0.6791.1PtpAffx.112163.1.S1_atCV243866hypothetical protein-1e+0At3g17160unknown proteinS.X.H.G.
0.6791.1PtpAffx.207865.1.S1_atpmrna15613hypothetical protein-9e-1At5g15290integral membrane family proteinS.X.H.G.
0.5078.6PtpAffx.102128.1.A1_atCV236844hypothetical protein-1e-7At5g03700PAN domain-containing proteinS.X.H.G.
0.4774.6Ptp.3805.1.S1_atCV274329hypothetical protein-2e-56At5g62740band 7 family proteinS.X.H.G.
0.2238.3PtpAffx.220022.1.S1_s_atpmrna36269hypothetical protein-2e+0At1g53610unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
24.699.8GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
18.999.7GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
17.299.6GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.098.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
5.697.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.996.5GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
1.785.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
1.178.0GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
1.076.2GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
0.872.0GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.550704PtpAffx.203915.1.S1_atpmrna7729hypothetical protein-4e-6At1g13340unknown proteinC.G.S.X.
0.026e-136PtpAffx.25342.1.S1_atAJ770781white-brown-complex ABC transporter family-2e-103At2g01320ABC transporter family proteinC.G.S.X.
0.016e-136PtpAffx.224157.1.S1_atpmrna42430pleiotropic drug resistance, ABC transporter family protein-8e-31At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)C.G.S.X.
0.016e-136PtpAffx.212516.1.S1_atpmrna24511hypothetical protein-1e+0At4g04840methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinC.G.S.X.
0.026e-136PtpAffx.210669.1.S1_x_atpmrna20922--1e-22At5g50740metal ion bindingC.G.S.X.
0.026e-136PtpAffx.210669.1.S1_atpmrna20922--1e-22At5g50740metal ion bindingC.G.S.X.
0.026e-136PtpAffx.202561.1.S1_atpmrna5133hypothetical protein-1e-8At5g16610unknown proteinC.G.S.X.
0.036e-136PtpAffx.159758.1.A1_atCV260202--4e+0At1g01130unknown proteinC.G.S.X.
0.026e-136PtpAffx.145486.1.S1_atCF233002hypothetical protein-1e+0At1g47310unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.024e-136Arabidopsis thalianaAt4g03620825662myosin heavy chain-relatedF:molecular_function unknown;P:response to cyclopentenone;C:unknown;MOFBPAV---C.G.S.X.
0.074e-240Glycine maxGmaAffx.6519.1.S1_atBI701341--2e-8At1g13340unknown proteinC.G.S.X.
0.038e-134Hordeum vulgareHV_CEb0017B21r2_atHV_CEb0017B21r2--3e+0Atmg00990-C.G.S.X.
0.022e-138Oryza sativaOs12g05694009640.m03709--7e+0Atcg00420-C.G.S.X.
0.035e-136Triticum aestivumTaAffx.8343.1.S1_atCA626916--2e+0At3g15300VQ motif-containing proteinC.G.S.X.
0.022e+032Vitis vinifera1621847_atCF202726.1hypothetical protein LOC100267426-4e+0At4g17310unknown proteinC.G.S.X.
0.033e+032Zea maysZm.9371.3.A1_x_atBM333622hypothetical protein LOC100275410-1e+0At1g53160SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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