CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.215276.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 PtpAffx.215276.1.S1_at pmrna29369 - - 2e+0 At4g20520 RNA binding / RNA-directed DNA polymerase S.X. H.G.
0.60 86.0 PtpAffx.225864.1.S1_at pmrna45498 hypothetical protein - 1e+0 At4g16500 cysteine protease inhibitor family protein / cystatin family protein S.X. H.G.
0.44 71.9 PtpAffx.221803.1.S1_at pmrna38862 hypothetical protein - 1e+1 At5g48480 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.214817.1.S1_at pmrna28680 hypothetical protein - 1e-2 At5g53860 emb2737 (embryo defective 2737) S.X. H.G.
0.29 50.5 PtpAffx.216491.1.S1_at pmrna31280 hypothetical protein - 8e-27 At5g35560 DENN (AEX-3) domain-containing protein S.X. H.G.
0.27 47.1 PtpAffx.217331.1.S1_at pmrna32547 hypothetical protein - 1e+0 At1g05290 transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.2 99.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.3 97.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1 93.2 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8 92.1 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-5 52 PtpAffx.219917.1.S1_at pmrna36082 hypothetical protein - 4e+1 At4g37925 NDH-M (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex) C.G. S.X.
0.01 3e-3 44 PtpAffx.219065.1.S1_at pmrna34869 hypothetical protein - 7e+0 At5g52740 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 4e-2 40 PtpAffx.219020.1.S1_at pmrna34810 hypothetical protein - 2e+0 At4g20520 RNA binding / RNA-directed DNA polymerase C.G. S.X.
0.01 2e-1 38 PtpAffx.222380.1.S1_at pmrna39738 hypothetical protein - 1e+0 At4g20590 receptor-like protein kinase-related C.G. S.X.
0.02 7e-1 36 PtpAffx.223597.1.S1_at pmrna41660 hypothetical protein - 7e+0 At5g40730 AGP24 C.G. S.X.
0.02 3e+0 34 PtpAffx.220619.1.S1_at pmrna37025 hypothetical protein - 4e+0 At2g35600 BRXL1 (BREVIS RADIX LIKE 1) C.G. S.X.
0.01 3e+0 34 PtpAffx.219507.1.S1_at pmrna35449 hypothetical protein - 3e+0 At3g17400 F-box family protein C.G. S.X.
0.02 3e+0 34 PtpAffx.219224.1.S1_at pmrna35081 hypothetical protein - 6e+0 At1g20693 HMGB2 (HIGH MOBILITY GROUP B 2) C.G. S.X.
0.03 3e+0 34 PtpAffx.218070.1.S1_at pmrna33591 hypothetical protein - 5e-1 At3g12870 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At4g20520 827800 RNA binding / RNA-directed DNA polymerase F:RNA binding, RNA-directed DNA polymerase activity;P:RNA-dependent DNA replication;C:cellular_component unknown;PMBOF - - - C.G. S.X.
0.03 7e-1 36 Glycine max PsAffx.psHB032xC21f_s_at PsAffx.psHB032xC21f - - 3e+0 At2g32960 tyrosine specific protein phosphatase family protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare EBem10_SQ004_F01_s_at EBem10_SQ004_F01 - - 7e-1 At3g48240 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein C.G. S.X.
0.03 1e+0 36 Oryza sativa OsAffx.27439.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.38489.1.S1_at BJ228910 - - 1e-3 At3g57040 ARR9 (RESPONSE REGULATOR 9) C.G. S.X.
0.02 9e+0 30 Vitis vinifera 1612356_at CF606524 hypothetical protein LOC100247067 - 7e-1 At1g35820 unknown protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.11819.1.A1_at CO518214 protein kinase domain containing protein - 4e-1 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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