CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.2152.2.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 82.2 PtpAffx.2152.2.S1_a_at CA826185 hypothetical protein - 2e-5 At3g13410 unknown protein S.X. H.G.
0.61 87.0 Ptp.1287.2.S1_s_at CX178052 hypothetical protein - 2e-73 At5g45130 RHA1 (RAB HOMOLOG 1) S.X. H.G.
0.55 82.2 PtpAffx.135416.1.S1_s_at CN517682 hypothetical protein - 6e-2 At5g50650 WD-40 repeat family protein / St12p protein, putative S.X. H.G.
0.50 78.6 PtpAffx.4529.1.S1_at CK091600 hypothetical protein - 4e-138 At5g03290 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative S.X. H.G.
0.50 78.6 PtpAffx.138176.1.S1_s_at BU883966 hypothetical protein - 7e-5 At2g17720 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.44 71.9 PtpAffx.200567.1.S1_at pmrna1120 hypothetical protein - 2e-39 At1g71190 SAG18 (SENESCENCE ASSOCIATED GENE 18) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.7 94.7 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 0 708 PtpAffx.2152.1.S1_s_at CV254452 hypothetical protein - 5e-5 At3g13410 unknown protein C.G. S.X.
0.45 0 708 PtpAffx.2152.1.S1_at CV254452 hypothetical protein - 5e-5 At3g13410 unknown protein C.G. S.X.
0.04 1e-1 38 PtpAffx.24376.1.A1_at CV262356 - - 2e-1 At1g33320 cystathionine gamma-synthase, chloroplast, putative / O-succinylhomoserine (Thiol)-lyase, putative C.G. S.X.
0.04 4e-1 36 PtpAffx.76441.2.A1_a_at CV230422 hypothetical protein - 1e+1 At5g64490 binding C.G. S.X.
0.03 4e-1 36 PtpAffx.63309.1.A1_at CV245184 - - 2e+0 At5g66550 Maf family protein C.G. S.X.
0.03 4e-1 36 PtpAffx.63390.1.A1_at CV242719 - - 6e+0 At5g63000 unknown protein C.G. S.X.
0.03 4e-1 36 PtpAffx.50031.1.A1_s_at CV267490 hypothetical protein - 3e-14 At1g27695 glycine-rich protein C.G. S.X.
0.03 4e-1 36 PtpAffx.50031.1.A1_at CV267490 hypothetical protein - 3e-14 At1g27695 glycine-rich protein C.G. S.X.
0.02 4e-1 36 PtpAffx.134364.1.S1_a_at DN491448 - - 2e-3 At5g08200 peptidoglycan-binding LysM domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-5 50 Arabidopsis thaliana At3g13410 820541 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P - - - C.G. S.X.
0.04 1e-1 38 Glycine max Gma.10779.2.S1_at BU578186 - - 2e-1 At1g55546 unknown protein C.G. S.X.
0.03 1e-1 36 Hordeum vulgare HF03B20r_s_at HF03B20r - - 9e-1 At2g32580 unknown protein C.G. S.X.
0.03 6e-1 36 Oryza sativa Os04g0169500 AK062453.1 - Hypothetical protein 1e+0 At5g17150 - C.G. S.X.
0.05 3e-1 36 Triticum aestivum Ta.19325.1.S1_at CA650401 - - 1e-1 At1g74220 unknown protein C.G. S.X.
0.14 2e-9 61 Vitis vinifera 1611513_s_at CF414212 hypothetical protein LOC100262157 - 2e-1 At3g49950 scarecrow transcription factor family protein C.G. S.X.
0.04 1e-1 36 Zea mays Zm.6552.1.A1_at AI649639 - - 8e-1 At3g13730 CYP90D1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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