Gene omics information

Query gene ID	PtpAffx.215156.1.S1_at
Gene name	ammonium transporter
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	PtpAffx.215156.1.S1_at	pmrna29194	ammonium transporter	-	6e-2	At1g64780	ATAMT1	S.X.	H.G.	Please selecteFP Browser (expression)
0.69	91.5	Ptp.7066.1.S1_at	DN487959	-	-	1e-3	At2g36690	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.71071.1.S1_s_at	AJ777574	hypothetical protein	-	6e-15	At1g22170	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.65	88.6	PtpAffx.222600.1.S1_at	pmrna40132	hypothetical protein	-	6e-1	Atmg00200	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.217262.1.S1_at	pmrna32453	hypothetical protein	-	6e-1	At5g38050	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.153129.1.A1_at	CV268824	hypothetical protein	-	9e-2	At1g49030	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.202047.1.S1_at	pmrna4081	hypothetical protein	-	6e+0	At5g06280	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.215047.1.S1_s_at	pmrna28999	high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter	-	9e-12	At5g43350	PHT1	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.219484.1.S1_s_at	pmrna35418	high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter	-	9e-4	At4g08895	inorganic phosphate transporter family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.87267.1.S1_at	CV275322	hypothetical protein	-	4e-1	At1g24267	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.3	99.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
19.2	99.7	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
10.0	98.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.2	96.8	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	1e-87	323	Ptp.5712.1.S1_at	CK113355	ammonium transporter	-	3e-28	At1g64780	ATAMT1	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	6e-9	61	PtpAffx.202713.1.S1_at	pmrna5432	ammonium transporter	-	6e-17	At3g24290	AMT1	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	4e-4	46	PtpAffx.208227.1.S1_at	pmrna16371	ammonium transporter	-	2e-20	At1g64780	ATAMT1	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	4e-4	46	PtpAffx.202712.1.S1_at	pmrna5431	ammonium transporter	-	4e-21	At4g28700	AMT1	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	2e-2	40	PtpAffx.3665.1.S1_a_at	BP934564	ammonium transporter	-	2e-11	At4g28700	AMT1	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	9e-2	38	PtpAffx.212028.1.S1_at	pmrna23613	ammonium transporter	-	2e-12	At1g64780	ATAMT1	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.31257.1.A1_at	CV241853	hypothetical protein	-	1e-6	At5g49120	senescence-associated protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.84159.1.A1_at	CK096835	hypothetical protein	-	3e-5	At3g01410	RNase H domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.5268.1.A1_at	CV255253	-	-	3e-3	At4g03165	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	6e-2	38	Arabidopsis thaliana	At1g64780	842786	ATAMT1	encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	4e-13	75	Glycine max	Gma.9265.1.S1_at	BU551320	-	-	6e-6	At4g28700	AMT1	C.G.	S.X.	Please select
0.11	5e-7	54	Hordeum vulgare	Contig20708_at	Contig20708	-	-	1e-4	At4g13510	AMT1	C.G.	S.X.	Please select
0.11	8e-6	52	Oryza sativa	Os02g0620500	9630.m03934	-	High affinity ammonium transporter	3e-19	At1g64780	ATAMT1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-6	54	Triticum aestivum	Ta.12823.1.S1_at	CA638403	Ammonium transporter Amt1;1	-	2e-20	At4g13510	AMT1	C.G.	S.X.	Please select
0.13	8e-5	46	Vitis vinifera	1610744_at	CF415597	hypothetical protein LOC100258016	-	1e+0	At2g47170	ARF1A1C	C.G.	S.X.	Please select
0.09	1e-13	75	Zea mays	Zm.11141.1.A1_at	BM338572	-	-	1e-7	At1g64780	ATAMT1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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