CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.215067.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.215067.1.S1_at pmrna29028 hypothetical protein - 3e-5 At2g21120 unknown protein S.X. H.G.
0.50 78.6 Ptp.4771.1.S1_at BU893475 hypothetical protein - 1e-10 At4g19670 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.43 69.7 PtpAffx.141519.1.S1_at AJ774599 hypothetical protein - 2e-120 At5g64070 PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) S.X. H.G.
0.31 53.7 PtpAffx.161360.1.S1_at CN524282 hypothetical protein - 1e-1 Atmg00270 - S.X. H.G.
0.29 50.5 PtpAffx.84497.1.S1_s_at CF231611 hypothetical protein - 9e-17 At3g18140 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.18 30.8 Ptp.5888.2.S1_a_at CK096684 hypothetical protein - 4e-118 At1g50370 serine/threonine protein phosphatase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.3 93.7 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3 93.7 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1 93.2 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1 93.2 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.91 0 1132 PtpAffx.201151.1.S1_at pmrna2260 hypothetical protein - 3e-11 At2g21120 unknown protein C.G. S.X.
0.13 3e-43 176 PtpAffx.13679.1.A1_at CK096135 - - 5e+0 At2g16020 unknown protein C.G. S.X.
0.16 5e-29 129 PtpAffx.52166.1.A1_at CV268523 hypothetical protein - 5e+0 At5g46115 unknown protein C.G. S.X.
0.14 1e-23 111 PtpAffx.70051.1.A1_at CV233658 hypothetical protein - 1e+1 Atcg00150 - C.G. S.X.
0.17 1e-17 91 PtpAffx.200729.1.S1_at pmrna1403 hypothetical protein - 8e-6 At4g38730 unknown protein C.G. S.X.
0.10 7e-16 85 PtpAffx.73050.1.S1_s_at CK106394 hypothetical protein - 3e-29 At4g38730 unknown protein C.G. S.X.
0.26 1e-14 81 PtpAffx.204286.1.S1_at pmrna8431 hypothetical protein - 2e-28 At2g21120 unknown protein C.G. S.X.
0.23 7e-13 75 PtpAffx.204903.1.S1_at pmrna9688 hypothetical protein - 2e-18 At4g09640 - C.G. S.X.
0.06 4e-5 50 PtpAffx.26053.1.A1_s_at CK116912 hypothetical protein - 7e-6 At4g09640 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 3e-5 50 Arabidopsis thaliana At2g21120 816647 unknown protein F:unknown;P:biological_process unknown;C:unknown;MFPBO - - - C.G. S.X.
0.13 4e-5 50 Glycine max GmaAffx.12487.1.S1_at BE347337 - - 4e+0 At5g38580 - C.G. S.X.
0.10 2e-1 36 Hordeum vulgare Contig16501_at Contig16501 - - 1e-10 At4g09640 - C.G. S.X.
0.10 2e-13 77 Oryza sativa Os05g0430700 AK121485.1 - Protein of unknown function DUF803 family protein 3e-4 At2g21120 unknown protein C.G. S.X.
0.10 5e-4 46 Triticum aestivum Ta.12527.2.S1_at CA648022 - - 3e-7 At4g38730 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1618956_at CB343141 hypothetical protein LOC100257557 - 7e-5 At5g52250 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.05 1e-2 40 Zea mays Zm.19231.1.S1_at CO517568 hypothetical protein LOC100274084 - 1e-30 At1g71900 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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