CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.214933.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.214933.1.S1_at pmrna28862 hypothetical protein - 5e+0 At3g15640 cytochrome c oxidase family protein S.X. H.G.
0.07 11.6 PtpAffx.211249.1.S1_s_at pmrna22080 - - 1e-11 At5g24670 catalytic/ hydrolase/ zinc ion binding S.X. H.G.
0.02 3.6 Ptp.6423.1.S1_at CV227334 - - 0 At5g08670 ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism S.X. H.G.
0.01 2.2 PtpAffx.156460.1.S1_at CK115873 - - 2e+0 At4g13760 polygalacturonase S.X. H.G.
0.01 2.2 Ptp.1145.1.A1_at CV246203 hypothetical protein - 5e-26 At1g60170 emb1220 (embryo defective 1220) S.X. H.G.
0.00 0.4 PtpAffx.43654.1.S1_at CV266337 hypothetical protein - 4e-1 At3g03020 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.1 99.4 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.1 97.6 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.4 97.0 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.2 96.8 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8 92.1 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6 91.3 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 38 PtpAffx.208993.1.S1_at pmrna17825 hypothetical protein - 2e-7 At3g02470 SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) C.G. S.X.
0.01 5e-1 36 PtpAffx.222932.1.S1_at pmrna40662 hypothetical protein - 4e+0 At1g02840 SR1 C.G. S.X.
0.02 2e+0 34 PtpAffx.219682.1.S1_at pmrna35652 hypothetical protein - 2e+0 At5g03590 GDSL-motif lipase/hydrolase protein-related C.G. S.X.
0.02 2e+0 34 PtpAffx.218841.1.S1_at pmrna34581 hypothetical protein - 7e+0 At3g26147 unknown protein C.G. S.X.
0.04 2e+0 34 PtpAffx.217601.1.S1_at pmrna32935 ABC transporter family protein - 1e+1 At3g27880 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.206740.1.S1_s_at pmrna13380 hypothetical protein - 2e-1 At2g23670 YCF37 (Arabidopsis homolog of Synechocystis YCF37) C.G. S.X.
0.01 7e+0 32 PtpAffx.44512.1.S1_a_at CV261744 hypothetical protein - 7e-26 At5g16880 VHS domain-containing protein / GAT domain-containing protein C.G. S.X.
0.03 7e+0 32 PtpAffx.220379.1.S1_at pmrna36758 hypothetical protein - 3e-1 At3g44250 CYP71B38 C.G. S.X.
0.03 7e+0 32 PtpAffx.220170.1.S1_at pmrna36524 hypothetical protein - 2e+1 At3g22820 allergen-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Arabidopsis thaliana At3g15640 820806 cytochrome c oxidase family protein F:cytochrome-c oxidase activity, metal ion binding;P:unknown;C:mitochondrial envelope, mitochondrion, chloroplast thylakoid membrane;MFPO - - - C.G. S.X.
0.03 7e-3 42 Glycine max PsAffx.C168000027_at PsAffx.C168000027 - - 2e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.03 6e-1 34 Hordeum vulgare HVSMEm0021F22r2_at HVSMEm0021F22r2 - - 7e-2 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) C.G. S.X.
0.03 6e-1 36 Oryza sativa Os04g0554500 AY466109.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 2e+0 At2g25820 transcription factor C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.118620.1.S1_at BJ316617 - - 1e+0 At2g31560 unknown protein C.G. S.X.
0.04 2e+1 28 Vitis vinifera 1622481_x_at CF568921 - - 3e-2 At5g10430 AGP4 (ARABINOGALACTAN PROTEIN 4) C.G. S.X.
0.03 1e-1 36 Zea mays Zm.15940.1.S1_at BM080478 - - 1e+0 At3g22580 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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