Gene omics information

Query gene ID PtpAffx.214933.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.214933.1.S1_atpmrna28862hypothetical protein-5e+0At3g15640cytochrome c oxidase family proteinS.X.H.G.
0.0711.6PtpAffx.211249.1.S1_s_atpmrna22080--1e-11At5g24670catalytic/ hydrolase/ zinc ion bindingS.X.H.G.
0.023.6Ptp.6423.1.S1_atCV227334--0At5g08670ATP binding / hydrogen ion transporting ATP synthase, rotational mechanismS.X.H.G.
0.012.2PtpAffx.156460.1.S1_atCK115873--2e+0At4g13760polygalacturonaseS.X.H.G.
0.012.2Ptp.1145.1.A1_atCV246203hypothetical protein-5e-26At1g60170emb1220 (embryo defective 1220)S.X.H.G.
0.000.4PtpAffx.43654.1.S1_atCV266337hypothetical protein-4e-1At3g03020unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.199.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
6.197.6GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.497.0GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.296.8GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.892.1GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.691.3GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.691.3GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.590.9GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.389.8GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-138PtpAffx.208993.1.S1_atpmrna17825hypothetical protein-2e-7At3g02470SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)C.G.S.X.
0.015e-136PtpAffx.222932.1.S1_atpmrna40662hypothetical protein-4e+0At1g02840SR1C.G.S.X.
0.022e+034PtpAffx.219682.1.S1_atpmrna35652hypothetical protein-2e+0At5g03590GDSL-motif lipase/hydrolase protein-relatedC.G.S.X.
0.022e+034PtpAffx.218841.1.S1_atpmrna34581hypothetical protein-7e+0At3g26147unknown proteinC.G.S.X.
0.042e+034PtpAffx.217601.1.S1_atpmrna32935ABC transporter family protein-1e+1At3g27880unknown proteinC.G.S.X.
0.022e+034PtpAffx.206740.1.S1_s_atpmrna13380hypothetical protein-2e-1At2g23670YCF37 (Arabidopsis homolog of Synechocystis YCF37)C.G.S.X.
0.017e+032PtpAffx.44512.1.S1_a_atCV261744hypothetical protein-7e-26At5g16880VHS domain-containing protein / GAT domain-containing proteinC.G.S.X.
0.037e+032PtpAffx.220379.1.S1_atpmrna36758hypothetical protein-3e-1At3g44250CYP71B38C.G.S.X.
0.037e+032PtpAffx.220170.1.S1_atpmrna36524hypothetical protein-2e+1At3g22820allergen-relatedC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e+032Arabidopsis thalianaAt3g15640820806cytochrome c oxidase family proteinF:cytochrome-c oxidase activity, metal ion binding;P:unknown;C:mitochondrial envelope, mitochondrion, chloroplast thylakoid membrane;MFPO---C.G.S.X.
0.037e-342Glycine maxPsAffx.C168000027_atPsAffx.C168000027--2e+0At4g0081060S acidic ribosomal protein P1 (RPP1B)C.G.S.X.
0.036e-134Hordeum vulgareHVSMEm0021F22r2_atHVSMEm0021F22r2--7e-2At3g52590UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)C.G.S.X.
0.036e-136Oryza sativaOs04g0554500AY466109.1-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein2e+0At2g25820transcription factorC.G.S.X.
0.035e+032Triticum aestivumTaAffx.118620.1.S1_atBJ316617--1e+0At2g31560unknown proteinC.G.S.X.
0.042e+128Vitis vinifera1622481_x_atCF568921--3e-2At5g10430AGP4 (ARABINOGALACTAN PROTEIN 4)C.G.S.X.
0.031e-136Zea maysZm.15940.1.S1_atBM080478--1e+0At3g22580protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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