Gene omics information

Query gene ID	PtpAffx.214837.1.S1_at
Gene name	white-brown-complex ABC transporter family
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.214837.1.S1_at	pmrna28728	white-brown-complex ABC transporter family	-	4e-3	At4g27420	ABC transporter family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.54	80.8	PtpAffx.203080.1.S1_at	pmrna6095	hypothetical protein	-	3e-24	At3g51470	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	Ptp.1906.1.A1_s_at	CK092074	hypothetical protein	-	7e-2	At2g24070	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.131325.1.S1_s_at	CA824597	hypothetical protein	-	1e-3	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.202007.1.S1_at	pmrna4000	amino acid transporter	-	2e-1	At1g52040	MBP1 (MYROSINASE-BINDING PROTEIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.21546.1.S1_at	DN494511	hypothetical protein	-	4e+0	At4g01460	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.63071.1.A1_at	CV255719	-	-	1e-1	At4g19200	proline-rich family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.14861.1.S1_at	CV238473	-	-	4e-1	At3g29070	protein transmembrane transporter	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.204982.1.S1_s_at	pmrna9866	hypothetical protein	-	3e-12	At5g59790	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.7814.2.A1_at	CV281562	hypothetical protein	-	7e-12	At5g47180	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.1	99.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
16.0	99.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
9.4	98.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
9.0	98.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.0	76.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.0	76.2	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	0	2294	PtpAffx.209983.1.S1_at	pmrna19695	white-brown-complex ABC transporter family	-	5e-18	At4g27420	ABC transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	6e-163	575	PtpAffx.9729.1.A1_at	DN492033	white-brown-complex ABC transporter family /// white-brown-complex ABC transporter family	-	3e-1	At4g11640	ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	9e-2	40	PtpAffx.212863.1.S1_at	pmrna25169	hypothetical protein	-	3e-8	At5g63420	emb2746 (embryo defective 2746)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-1	38	PtpAffx.221304.1.S1_at	pmrna38091	white-brown-complex ABC transporter family	-	1e-6	At1g71960	ABC transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.214812.1.S1_at	pmrna28669	hypothetical protein	-	1e-111	At1g53165	ATMAP4K ALPHA1	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-1	38	PtpAffx.212377.1.S1_x_at	pmrna24254	white-brown-complex ABC transporter family	-	4e-6	At1g71960	ABC transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-1	38	PtpAffx.212377.1.S1_at	pmrna24254	white-brown-complex ABC transporter family	-	4e-6	At1g71960	ABC transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-1	38	PtpAffx.212377.1.S1_s_at	pmrna24254	white-brown-complex ABC transporter family	-	4e-6	At1g71960	ABC transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-1	38	PtpAffx.208987.1.S1_at	pmrna17808	white-brown-complex ABC transporter family	-	3e-19	At3g25620	ABC transporter family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-3	44	Arabidopsis thaliana	At4g27420	828850	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMFAPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e+0	34	Glycine max	HgAffx.16547.1.S1_at	CB279809	-	-	3e+0	Atmg00140	-	C.G.	S.X.	Please select
0.01	2e+0	34	Hordeum vulgare	Contig4276_s_at	Contig4276	-	-	7e-3	At3g18430	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.01	1e-1	40	Oryza sativa	Os02g0735800	AK065002.1	-	Protein prenyltransferase domain containingprotein	1e+0	At3g13880	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Triticum aestivum	TaAffx.55723.1.A1_at	CA662150	-	-	4e+0	At4g13095	LCR37 (Low-molecular-weight cysteine-rich 37)	C.G.	S.X.	Please select
0.03	1e+0	34	Vitis vinifera	1617025_at	CF513033	hypothetical protein LOC100247745	-	2e-23	At1g31770	ABC transporter family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zea mays	Zm.4940.2.S1_a_at	AI979640	-	-	2e-21	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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