Gene omics information

Query gene ID	PtpAffx.214817.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.214817.1.S1_at	pmrna28680	hypothetical protein	-	1e-2	At5g53860	emb2737 (embryo defective 2737)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.225864.1.S1_at	pmrna45498	hypothetical protein	-	1e+0	At4g16500	cysteine protease inhibitor family protein / cystatin family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.215276.1.S1_at	pmrna29369	-	-	2e+0	At4g20520	RNA binding / RNA-directed DNA polymerase	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.221803.1.S1_at	pmrna38862	hypothetical protein	-	1e+1	At5g48480	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.217157.1.S1_at	pmrna32308	hypothetical protein	-	4e+1	At5g57000	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.217331.1.S1_at	pmrna32547	hypothetical protein	-	1e+0	At1g05290	transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.3	98.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.9	98.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	1e-55	216	PtpAffx.2338.1.A1_at	CV267067	hypothetical protein	-	2e-124	At1g71820	SEC6	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	2e-20	99	PtpAffx.146161.1.S1_at	CX173062	hypothetical protein	-	2e-40	At5g53860	emb2737 (embryo defective 2737)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	36	PtpAffx.217213.1.S1_s_at	pmrna32388	hypothetical protein	-	7e-6	At4g20020	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	36	PtpAffx.217213.1.S1_at	pmrna32388	hypothetical protein	-	7e-6	At4g20020	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	36	PtpAffx.216647.1.S1_at	pmrna31570	hypothetical protein	-	1e-17	At2g44280	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	36	PtpAffx.207037.1.S1_at	pmrna13945	hypothetical protein	-	5e-2	At3g18670	ankyrin repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	2e-1	36	PtpAffx.202783.1.S1_at	pmrna5533	hypothetical protein	-	1e-14	At4g20020	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-1	36	PtpAffx.14412.1.S1_at	CV242434	hypothetical protein	-	6e-19	At4g30620	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	34	PtpAffx.215368.1.S1_at	pmrna29514	hypothetical protein	-	2e-4	At3g52450	PUB22 (PLANT U-BOX 22)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-2	40	Arabidopsis thaliana	At5g53860	835467	emb2737 (embryo defective 2737)	F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	7e-26	117	Glycine max	Gma.1152.1.S1_a_at	BI971052	-	-	9e-36	At1g71820	SEC6	C.G.	S.X.	Please select
0.19	1e-6	52	Hordeum vulgare	Contig15859_at	Contig15859	-	-	1e-10	At1g71820	SEC6	C.G.	S.X.	Please select
0.07	8e-8	57	Oryza sativa	Os02g0749500	AK119455.1	-	Exocyst complex component Sec6 family protein	2e-49	At1g71820	SEC6	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e-9	61	Triticum aestivum	Ta.26998.1.S1_at	CD453772	-	-	7e-26	At1g71820	SEC6	C.G.	S.X.	Please select
0.05	3e+0	30	Vitis vinifera	1621803_at	CB007579	-	-	3e+0	At5g46300	unknown protein	C.G.	S.X.	Please select
0.14	2e-8	57	Zea mays	Zm.18011.1.A1_at	CK827802	-	-	5e-41	At1g71820	SEC6	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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