CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.214777.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.93 99.5 PtpAffx.214777.1.S1_at pmrna28621 hypothetical protein - 1e+1 At1g33850 40S ribosomal protein S15, putative S.X. H.G.
0.15 25.3 PtpAffx.71504.1.S1_a_at CK091854 hypothetical protein - 4e-1 At5g25940 early nodulin-related S.X. H.G.
0.13 21.6 PtpAffx.156588.1.S1_at DN501982 hypothetical protein - 5e-9 Atmg00290 - S.X. H.G.
0.10 16.3 Ptp.75.2.S1_at BI126224 hypothetical protein - 1e-4 At5g42000 ORMDL family protein S.X. H.G.
0.01 2.2 PtpAffx.29897.1.S1_at CV243850 - - 2e-3 At3g60050 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.01 2.2 PtpAffx.811.5.A1_at CV271621 hypothetical protein - 4e+0 At2g35790 unknown protein S.X. H.G.
0.01 2.2 PtpAffx.95913.1.A1_at CV228094 hypothetical protein - 4e-4 At4g32910 - S.X. H.G.
0.01 2.2 PtpAffx.209299.1.S1_at pmrna18381 hypothetical protein - 4e-1 At3g18280 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.0 99.6 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
16.4 99.6 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
7.8 98.4 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0 95.3 GSM372045 Clone1979_LPI5_N+_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4 94.0 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1 93.2 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 34 PtpAffx.223510.1.S1_at pmrna41550 hypothetical protein - 3e-1 At1g01140 CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) C.G. S.X.
0.02 1e+0 34 PtpAffx.220173.1.S1_at pmrna36527 - - 4e+1 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.03 1e+0 34 PtpAffx.219125.1.S1_at pmrna34948 hypothetical protein - 6e+0 At5g04750 F1F0-ATPase inhibitor protein, putative C.G. S.X.
0.03 1e+0 34 PtpAffx.215333.1.S1_at pmrna29457 hypothetical protein - 4e-1 At3g06600 unknown protein C.G. S.X.
0.03 1e+0 34 Ptp.4996.1.S1_at CV277225 hypothetical protein - 6e+0 At5g05110 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.04 5e+0 32 PtpAffx.223032.1.S1_at pmrna40819 - - 3e+0 At1g12810 proline-rich family protein C.G. S.X.
0.01 5e+0 32 PtpAffx.222923.1.S1_at pmrna40651 hypothetical protein - 2e+0 At1g71480 nuclear transport factor 2 (NTF2) family protein C.G. S.X.
0.01 5e+0 32 PtpAffx.220201.1.S1_at pmrna36558 hypothetical protein - 1e+0 At1g69230 SP1L2 (SPIRAL1-LIKE2) C.G. S.X.
0.02 5e+0 32 PtpAffx.220219.1.S1_at pmrna36576 hypothetical protein - 1e+1 At2g35750 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+1 30 Arabidopsis thaliana At1g33850 840281 40S ribosomal protein S15, putative F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MPFOA - - - C.G. S.X.
0.04 5e+0 32 Glycine max PsAffx.psMA012xN01f_at PsAffx.psMA012xN01f - - 3e+0 At1g61920 unknown protein C.G. S.X.
0.05 2e+0 32 Hordeum vulgare EBed01_SQ002_N06_at EBed01_SQ002_N06 - - 2e+0 At5g35695 unknown protein C.G. S.X.
0.04 4e-1 36 Oryza sativa Os05g0156100 9633.m00562 - - 7e-1 At4g08230 glycine-rich protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.50383.1.S1_at CA741732 - - 4e-3 At4g28300 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.04 2e+1 28 Vitis vinifera 1618359_at CB346158 - - 2e+0 At5g43990 SUVR2 C.G. S.X.
0.05 2e+0 32 Zea mays Zm.6260.1.A1_at AI691172 - - 3e+0 At4g22235 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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