CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.214678.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.214678.1.S1_at pmrna28494 hypothetical protein - 2e+1 At5g36960 unknown protein S.X. H.G.
0.60 86.0 PtpAffx.217617.1.S1_x_at pmrna32957 hypothetical protein - 6e-1 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family S.X. H.G.
0.44 71.9 PtpAffx.224940.1.S1_at pmrna43877 hypothetical protein - 1e-1 At5g06710 HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA) S.X. H.G.
0.34 58.3 PtpAffx.85847.1.S1_at CK106428 - - 4e+0 At4g02910 unknown protein S.X. H.G.
0.31 53.7 PtpAffx.119306.1.S1_at DN484066 - - 1e-1 At1g47765 F-box family protein S.X. H.G.
0.17 29.1 Ptp.7288.1.S1_at BU895370 hypothetical protein - 2e-1 At5g62550 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
31.4 99.9 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
10.1 99.0 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.0 98.0 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.0 98.0 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2 93.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 36 PtpAffx.216459.1.S1_at pmrna31240 hypothetical protein - 7e+0 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.02 2e+0 34 PtpAffx.223483.1.S1_at pmrna41512 hypothetical protein - 8e+0 At5g59820 RHL41 (RESPONSIVE TO HIGH LIGHT 41) C.G. S.X.
0.03 2e+0 34 PtpAffx.223032.1.S1_at pmrna40819 - - 3e+0 At1g12810 proline-rich family protein C.G. S.X.
0.03 2e+0 34 PtpAffx.219285.1.S1_at pmrna35157 hypothetical protein - 5e-1 At4g36980 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.218075.1.S1_at pmrna33596 hypothetical protein - 3e+1 At5g25490 zinc finger (Ran-binding) family protein C.G. S.X.
0.03 2e+0 34 PtpAffx.211150.1.S1_at pmrna21916 hypothetical protein - 1e+1 At2g41840 40S ribosomal protein S2 (RPS2C) C.G. S.X.
0.02 2e+0 34 Ptp.3045.1.S1_at BU894390 arogenate/prephenate dehydratase - 7e-31 At2g27820 PD1 (PREPHENATE DEHYDRATASE 1) C.G. S.X.
0.02 2e+0 34 Ptp.3045.1.S1_s_at BU894390 arogenate/prephenate dehydratase - 7e-31 At2g27820 PD1 (PREPHENATE DEHYDRATASE 1) C.G. S.X.
0.02 8e+0 32 PtpAffx.33682.1.A1_at CA930824 hypothetical protein - 2e-6 At4g00480 myc-related transcription factor (MYC1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+1 30 Arabidopsis thaliana At5g36960 833666 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 1e-1 38 Glycine max PsAffx.CL1785Contig1_at PsAffx.CL1785Contig1 - - 1e+0 At5g16390 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) C.G. S.X.
0.03 5e-2 38 Hordeum vulgare Contig21642_at Contig21642 - - 6e+0 At3g49550 unknown protein C.G. S.X.
0.04 1e-2 42 Oryza sativa Os01g0517300 9629.m03117 - - 9e+0 At5g65310 ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5) C.G. S.X.
0.04 2e+0 34 Triticum aestivum TaAffx.111069.1.S1_at CA648532 - - 9e+0 At5g10580 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1620792_at CF605390 hypothetical protein LOC100242276 - 3e-1 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
0.04 4e-2 38 Zea mays Zm.4522.1.S1_at AI734575 hypothetical protein LOC100194076 - 4e-1 At1g56710 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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