Gene omics information

Query gene ID	PtpAffx.214538.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.58	84.2	PtpAffx.214538.1.S1_s_at	pmrna28252	hypothetical protein	-	5e+0	At3g62320	nucleic acid binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.24159.1.A1_at	CA923426	hypothetical protein	-	9e-3	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.18976.1.A1_at	CV226921	hypothetical protein	-	1e+1	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.24159.1.A1_x_at	CA923426	hypothetical protein	-	9e-3	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.2386.3.S1_at	CV274142	hypothetical protein	-	2e+0	At4g03150	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.87	97.5	PtpAffx.222219.1.S1_at	pmrna39489	-	-	5e-3	At3g22020	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.87	97.5	PtpAffx.128798.1.S1_at	CN520667	hypothetical protein	-	2e-15	At5g41080	glycerophosphoryl diester phosphodiesterase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.85	97.2	PtpAffx.127432.1.A1_at	CV257984	hypothetical protein	-	4e-4	At1g68725	AGP19 (ARABINOGALACTAN-PROTEIN 19)	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.6273.1.S1_at	CV264184	-	-	1e+1	At5g05910	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.210801.1.S1_x_at	pmrna21209	hypothetical protein	-	4e+0	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
47.9	100.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
36.4	100.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.4	95.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
0.9	74.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
0.4	59.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.3	55.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
0.2	49.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.2	49.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
0.2	49.7	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	8e-12	71	PtpAffx.214539.1.S1_at	pmrna28253	hypothetical protein	-	3e-2	At1g80140	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	8e-12	71	PtpAffx.214539.1.S1_a_at	pmrna28253	hypothetical protein	-	3e-2	At1g80140	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	7e-3	42	PtpAffx.223937.1.S1_at	pmrna42162	hypothetical protein	-	2e+0	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.40844.1.S1_at	CV233738	-	-	1e-4	At3g61870	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.204190.1.S1_at	pmrna8250	hypothetical protein	-	6e-2	At1g23510	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e+0	32	PtpAffx.77231.3.A1_a_at	CV253092	-	-	1e+0	At2g30925	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e+0	32	PtpAffx.77231.3.A1_at	CV253092	-	-	1e+0	At2g30925	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.37990.1.S1_at	CV257102	-	-	1e-32	At1g06890	transporter-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.225487.1.S1_at	pmrna44866	hypothetical protein	-	7e-1	At2g38360	PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At3g62320	825405	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	GmaAffx.15737.1.A1_at	CD394878	-	-	3e+0	At2g04032	ZIP7 (ZINC TRANSPORTER 7 PRECURSOR)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig24017_at	Contig24017	-	-	1e-6	At4g17740	C-terminal processing protease, putative	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	Os.32983.2.A1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Triticum aestivum	TaAffx.25221.1.S1_at	CA704395	-	-	8e+0	At5g23535	KOW domain-containing protein	C.G.	S.X.	Please select
0.03	3e-2	38	Vitis vinifera	1613027_at	CB982624	hypothetical protein LOC100264294	-	5e+0	At2g36360	kelch repeat-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.15104.1.A1_at	AI065711	-	-	2e-1	At3g05080	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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