CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.214387.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 PtpAffx.214387.1.S1_at pmrna27998 hypothetical protein - 7e-1 At4g16510 YbaK/prolyl-tRNA synthetase-related S.X. H.G.
0.57 84.2 Ptp.3947.1.S1_s_at CV253657 hypothetical protein - 4e-1 At5g06870 PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2) S.X. H.G.
0.57 84.2 Ptp.5844.1.S1_s_at CX169943 hypothetical protein - 1e-99 At3g46440 UXS5 S.X. H.G.
0.50 78.6 PtpAffx.1592.1.S1_at BP926516 hypothetical protein - 3e-2 At3g55430 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative S.X. H.G.
0.46 73.7 Ptp.3332.1.S1_at CV226721 hypothetical protein - 6e-4 At2g35980 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) S.X. H.G.
0.38 63.7 PtpAffx.31375.3.A1_a_at BP934645 hypothetical protein - 3e-1 At3g43550 carboxylesterase/ hydrolase, acting on ester bonds / lipase S.X. H.G.
0.27 47.1 PtpAffx.26534.1.S1_at CK095200 hypothetical protein - 6e-10 At4g39670 glycolipid binding / glycolipid transporter S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.1 99.7 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.0 99.1 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
10.4 99.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.5 97.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.9 97.4 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 6e-2 38 PtpAffx.216573.1.S1_at pmrna31437 hypothetical protein - 7e-1 At5g17150 - C.G. S.X.
0.04 6e-2 38 PtpAffx.133124.1.S1_at CX174170 hypothetical protein - 1e+0 At1g74320 choline kinase, putative C.G. S.X.
0.01 1e+0 34 PtpAffx.224335.1.S1_at pmrna42790 - - 3e-4 At5g23570 SGS3 (SUPPRESSOR OF GENE SILENCING 3) C.G. S.X.
0.03 1e+0 34 PtpAffx.224001.1.S1_s_at pmrna42230 hypothetical protein - 4e-1 At5g50370 adenylate kinase, putative C.G. S.X.
0.00 1e+0 34 PtpAffx.212778.1.S1_at pmrna25006 - - 7e-20 At3g48190 ATM (ATAXIA-TELANGIECTASIA MUTATED) C.G. S.X.
0.01 1e+0 34 PtpAffx.208115.1.S1_at pmrna16120 hypothetical protein - 2e-1 At1g65810 tRNA-splicing endonuclease positive effector-related C.G. S.X.
0.01 1e+0 34 PtpAffx.207397.1.S1_at pmrna14678 hypothetical protein - 3e-1 At3g62080 SNF7 family protein C.G. S.X.
0.01 1e+0 34 PtpAffx.207397.1.S1_x_at pmrna14678 hypothetical protein - 3e-1 At3g62080 SNF7 family protein C.G. S.X.
0.02 1e+0 34 Ptp.5488.1.S1_at AI162649 hypothetical protein - 2e-3 At1g80610 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-1 34 Arabidopsis thaliana At4g16510 827349 YbaK/prolyl-tRNA synthetase-related F:molecular_function unknown;P:unknown;C:cellular_component unknown;OP - - - C.G. S.X.
0.04 3e-1 36 Glycine max GmaAffx.92270.1.S1_at CF807322 - - 4e-53 At5g09590 MTHSC70-2 (MITOCHONDRIAL HSP70 2) C.G. S.X.
0.04 6e+0 30 Hordeum vulgare HVSMEg0002C06r2_s_at HVSMEg0002C06r2 - - 8e-1 At1g06850 AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52) C.G. S.X.
0.04 6e+0 32 Oryza sativa OsAffx.6348.1.S1_at - - - 0 C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.81160.1.S1_at CA689027 - - 2e-1 At5g08300 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative C.G. S.X.
0.12 1e-5 48 Vitis vinifera 1619960_at CF211008 hypothetical protein LOC100264996 - 2e+0 At3g50900 unknown protein C.G. S.X.
0.03 1e+0 32 Zea mays Zm.18453.1.A1_at CO523307 LOL3 - 5e+0 At2g28700 AGL46 (AGAMOUS-LIKE 46) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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