CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.214257.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 71.9 PtpAffx.214257.1.S1_at pmrna27740 hypothetical protein - 8e-2 At2g02230 AtPP2-B1 (Phloem protein 2-B1) S.X. H.G.
0.50 78.6 PtpAffx.217155.1.S1_at pmrna32306 hypothetical protein - 2e+1 At2g36030 unknown protein S.X. H.G.
0.46 73.7 Ptp.7803.1.S1_at DN499451 - - 1e+0 Atmg01150 - S.X. H.G.
0.32 55.2 PtpAffx.140892.2.A1_a_at CV241766 - - 3e-1 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) S.X. H.G.
0.18 30.8 PtpAffx.139528.2.A1_at CV228130 - - 4e-10 At3g08570 protein binding / signal transducer S.X. H.G.
0.14 23.5 PtpAffx.212550.1.S1_at pmrna24587 NAC domain protein, IPR003441 - 2e+0 At5g62850 AtVEX1 (VEGETATIVE CELL EXPRESSED1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.3 99.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
10.4 99.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 4e-29 129 PtpAffx.206850.1.S1_at pmrna13605 hypothetical protein - 4e-4 At5g24560 AtPP2-B12 (Phloem protein 2-B12) C.G. S.X.
0.17 8e-12 71 PtpAffx.147023.1.A1_at CV254437 - - 4e-4 At5g24560 AtPP2-B12 (Phloem protein 2-B12) C.G. S.X.
0.33 8e-12 71 PtpAffx.144764.1.S1_at DN503150 f-box family protein - 4e-1 At2g14910 unknown protein C.G. S.X.
0.15 1e-10 67 Ptp.7677.1.S1_at DN489009 f-box family protein - 7e-3 At2g02240 MEE66 (maternal effect embryo arrest 66) C.G. S.X.
0.25 8e-9 61 PtpAffx.214258.1.S1_at pmrna27741 hypothetical protein - 7e-3 At1g56250 AtPP2-B14 (Phloem protein 2-B14) C.G. S.X.
0.16 5e-7 56 PtpAffx.50481.1.S1_at DN493132 f-box family protein - 1e-6 At5g24560 AtPP2-B12 (Phloem protein 2-B12) C.G. S.X.
0.14 5e-7 56 PtpAffx.214256.1.S1_at pmrna27739 f-box family protein - 1e-1 At5g24560 AtPP2-B12 (Phloem protein 2-B12) C.G. S.X.
0.06 7e-3 42 PtpAffx.216021.1.S1_s_at pmrna30554 hypothetical protein - 6e-4 At1g56240 AtPP2-B13 (Phloem protein 2-B13) C.G. S.X.
0.04 7e-3 42 PtpAffx.214986.1.S1_at pmrna28922 hypothetical protein - 4e-4 At1g56240 AtPP2-B13 (Phloem protein 2-B13) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-2 38 Arabidopsis thaliana At2g02230 814754 AtPP2-B1 (Phloem protein 2-B1) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 1e-1 38 Glycine max GmaAffx.28482.1.S1_at CA938935 - - 1e+0 At4g32030 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HD07M18r_at HD07M18r - - 7e-1 At3g29370 unknown protein C.G. S.X.
0.04 2e-1 38 Oryza sativa OsAffx.12373.1.S1_at - - - 0 C.G. S.X.
0.03 9e-2 38 Triticum aestivum TaAffx.111613.1.S1_at CA636910 - - 9e-1 At3g57670 NTT (NO TRANSMITTING TRACT) C.G. S.X.
0.05 2e-2 38 Vitis vinifera 1620126_at CF202737.1 - - 2e+0 At1g77932 - C.G. S.X.
0.03 2e+0 32 Zea mays Zm.6159.1.A1_a_at BM380722 hypothetical protein LOC100275297 - 6e-21 At2g34160 nucleic acid binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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