Gene omics information

Query gene ID	PtpAffx.21417.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	PtpAffx.21417.1.S1_at	CN520322	hypothetical protein	-	3e-135	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.69	91.5	PtpAffx.120301.1.S1_s_at	CF235521	hypothetical protein	-	9e-2	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.130346.1.S1_at	CN523190	hypothetical protein	-	2e-33	At2g26430	RCY1 (ARGININE-RICH CYCLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.132468.1.S1_s_at	DN498520	-	-	4e-1	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.85760.1.S1_s_at	CX181147	hypothetical protein	-	6e-6	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.156707.1.S1_s_at	BU873655	hypothetical protein	-	4e-4	At2g03110	RNA binding / nucleic acid binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.54	80.8	PtpAffx.3977.1.S1_s_at	CA821307	hypothetical protein	-	2e-18	At5g52040	ATRSP41	S.X.	H.G.	Please selecteFP Browser (expression)
0.51	78.9	PtpAffx.120301.1.S1_at	CF235521	-	-	9e-2	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.49	75.7	PtpAffx.218468.1.S1_at	pmrna34094	hypothetical protein	-	0	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.146172.1.S1_at	CF228310	hypothetical protein	-	8e-18	At5g09880	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	95.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2	93.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.9	92.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	5e-128	458	Ptp.5888.2.S1_a_at	CK096684	hypothetical protein	-	4e-118	At1g50370	serine/threonine protein phosphatase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	3e-6	54	PtpAffx.119547.1.S1_s_at	BP928546	hypothetical protein	-	1e-89	At2g42500	PP2A-4	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	3e-6	54	Ptp.7382.1.S1_at	CX176453	-	-	1e-121	At2g42500	PP2A-4	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-6	54	Ptp.4495.3.S1_at	BU810858	hypothetical protein	-	3e-77	At1g10430	PP2A-2	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	1e-2	42	PtpAffx.39908.3.S1_a_at	CX176310	hypothetical protein	-	1e-71	At1g10430	PP2A-2	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	1e-2	42	PtpAffx.39908.2.S1_at	CN521103	hypothetical protein	-	3e-139	At1g10430	PP2A-2	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-1	38	Ptp.4495.1.S1_s_at	CV274498	hypothetical protein	-	2e-72	At1g10430	PP2A-2	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.70192.2.A1_at	CV228190	-	-	5e+0	At4g18580	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.5077.1.A1_s_at	CV262523	hypothetical protein	-	5e-60	At5g55260	PPX2 (PROTEIN PHOSPHATASE X 2)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	3e-135	482	Arabidopsis thaliana	At3g19980	821536	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	Encodes catalytic subunit of serine/threonine protein phosphatase 2A. It can associate with phytochromes A and B in vitro. Mutant plants display an accelerated flowering phenotype.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.64	5e-168	591	Glycine max	GmaAffx.90260.1.S1_s_at	CF805985	-	-	5e-136	At1g50370	serine/threonine protein phosphatase, putative	C.G.	S.X.	Please select
0.42	3e-53	208	Hordeum vulgare	Contig5442_at	Contig5442	-	-	4e-107	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	C.G.	S.X.	Please select
0.36	4e-86	319	Oryza sativa	Os.18690.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	1e-32	141	Triticum aestivum	Ta.21114.2.S1_at	BG604841	-	-	4e-47	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	C.G.	S.X.	Please select
0.53	0	636	Vitis vinifera	1615735_at	CD797265	hypothetical protein LOC100259271	-	0	At1g50370	serine/threonine protein phosphatase, putative	C.G.	S.X.	Please select
0.39	7e-66	250	Zea mays	Zm.16843.1.S1_at	AI978092	-	-	2e-47	At1g50370	serine/threonine protein phosphatase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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