CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.214091.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.214091.1.S1_at pmrna27435 hypothetical protein - 1e-3 At1g23720 proline-rich extensin-like family protein S.X. H.G.
0.67 91.1 PtpAffx.201641.1.S1_at pmrna3256 hypothetical protein - 3e-1 At1g09483 unknown protein S.X. H.G.
0.61 87.0 PtpAffx.160334.1.A1_at CV236700 hypothetical protein - 1e-1 At5g18430 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.55 82.2 PtpAffx.221340.1.S1_at pmrna38171 hypothetical protein - 3e-21 At1g71691 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.35 59.7 Ptp.4356.1.S1_at CV243203 hypothetical protein - 4e-43 At2g37630 AS1 (ASYMMETRIC LEAVES 1) S.X. H.G.
0.33 57.5 PtpAffx.214245.1.S1_a_at pmrna27715 hypothetical protein - 8e-9 At2g25060 plastocyanin-like domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.6 99.8 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
19.2 99.7 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
13.1 99.4 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
10.5 99.0 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
9.2 98.8 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.6 96.2 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8 94.9 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-3 44 PtpAffx.200832.1.S1_x_at pmrna1623 - - 2e-3 At4g08370 proline-rich extensin-like family protein C.G. S.X.
0.03 6e-3 42 PtpAffx.214328.1.S1_at pmrna27862 hypothetical protein - 5e-4 At1g30475 - C.G. S.X.
0.11 6e-3 42 PtpAffx.205601.1.S1_at pmrna11055 hypothetical protein - 7e-5 At1g26240 proline-rich extensin-like family protein C.G. S.X.
0.03 3e-2 40 PtpAffx.224029.1.S1_x_at pmrna42263 hypothetical protein - 1e+0 At5g41520 40S ribosomal protein S10 (RPS10B) C.G. S.X.
0.03 3e-2 40 PtpAffx.224029.1.S1_at pmrna42263 hypothetical protein - 1e+0 At5g41520 40S ribosomal protein S10 (RPS10B) C.G. S.X.
0.02 3e-2 40 PtpAffx.223237.1.S1_at pmrna41126 hypothetical protein - 2e-8 At3g27010 AT-TCP20 C.G. S.X.
0.01 3e-2 40 PtpAffx.208475.1.S1_at pmrna16836 hypothetical protein - 6e-13 At5g49110 unknown protein C.G. S.X.
0.06 3e-2 40 PtpAffx.124618.1.S1_at BU827056 hypothetical protein - 1e-7 At3g60530 zinc finger (GATA type) family protein C.G. S.X.
0.02 1e-1 38 PtpAffx.68426.1.S1_at CV243359 f-box family protein - 6e-20 At5g60850 OBP4 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-3 44 Arabidopsis thaliana At1g23720 838982 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA - - - C.G. S.X.
0.15 6e-3 42 Glycine max GmaAffx.91432.1.S1_x_at CF807157 - - 4e-3 At1g76930 ATEXT4 (EXTENSIN 4) C.G. S.X.
0.03 9e-3 40 Hordeum vulgare Contig22184_at Contig22184 - - 5e+0 At5g56070 unknown protein C.G. S.X.
0.04 9e-3 42 Oryza sativa Os07g0633100 AK071223.1 - Conserved hypothetical protein 2e-1 At5g16430 - C.G. S.X.
0.05 7e-2 38 Triticum aestivum TaAffx.3722.2.S1_s_at CA594125 - - 4e-3 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) C.G. S.X.
0.09 2e-14 77 Vitis vinifera 1615789_at BQ795769 - - 1e-3 At1g26250 proline-rich extensin, putative C.G. S.X.
0.07 5e-1 34 Zea mays ZmAffx.967.1.S1_s_at AI668376 Hypothetical protein LOC100193584 - 1e+1 At5g29613 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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