Gene omics information

Query gene ID	PtpAffx.214087.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	94.1	PtpAffx.214087.1.S1_at	pmrna27425	hypothetical protein	-	3e-10	At4g33230	pectinesterase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.93	99.5	PtpAffx.218300.1.S1_at	pmrna33866	hypothetical protein	-	6e+0	Atmg00820	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.202816.1.S1_at	pmrna5585	hypothetical protein	-	5e-2	At3g62170	VGDH2 (Vanguard 1 homolog 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.82	96.3	PtpAffx.207518.1.S1_at	pmrna14929	hypothetical protein	-	5e-24	At5g20940	glycosyl hydrolase family 3 protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.221525.1.S1_at	pmrna38453	hypothetical protein	-	8e-18	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	S.X.	H.G.	Please selecteFP Browser (expression)
0.79	95.3	PtpAffx.202346.1.S1_at	pmrna4712	hypothetical protein	-	3e-3	At1g80170	polygalacturonase, putative / pectinase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.75	94.1	PtpAffx.208843.1.S1_at	pmrna17537	hypothetical protein	-	2e-9	At1g14700	PAP3 (PURPLE ACID PHOSPHATASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.75	94.1	PtpAffx.214292.1.S1_at	pmrna27797	hypothetical protein	-	1e-4	At5g45670	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.2599.1.S1_at	BU878107	hypothetical protein	-	1e+0	At5g54430	universal stress protein (USP) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.72	92.7	PtpAffx.204306.1.S1_at	pmrna8471	hypothetical protein	-	2e-20	At4g35010	BGAL11 (beta-galactosidase 11)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.4	99.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
20.7	99.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
16.5	99.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
10.8	99.1	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
10.4	99.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
9.3	98.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.0	33.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.0	33.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.83	0	1796	PtpAffx.219726.1.S1_at	pmrna35740	hypothetical protein	-	6e-20	At4g33230	pectinesterase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-3	44	Ptp.1705.1.A1_at	CK093084	-	-	1e-13	At1g11580	PMEPCRA (METHYLESTERASE PCR A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-1	38	PtpAffx.216013.1.S1_at	pmrna30544	hypothetical protein	-	2e-1	At5g49180	pectinesterase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.211308.1.S1_s_at	pmrna22171	alkaloid o-methyltransferase related /// alkaloid o-methyltransferase related	-	2e-1	At4g13110	BSD domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.211308.1.S1_at	pmrna22171	alkaloid o-methyltransferase related	-	2e-1	At4g13110	BSD domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.204880.1.S1_at	pmrna9644	hypothetical protein	-	3e-15	At1g51440	lipase class 3 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.102182.1.A1_at	CV239394	-	-	9e-2	At4g13110	BSD domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-1	38	Ptp.6683.2.A1_at	DN490332	alkaloid o-methyltransferase related /// alkaloid o-methyltransferase related /// hypothetical protein	-	1e-3	At5g53810	O-methyltransferase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.225247.1.S1_at	pmrna44461	hypothetical protein	-	2e-7	At5g44360	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	3e-10	67	Arabidopsis thaliana	At4g33230	829459	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	36	Glycine max	GmaAffx.57996.1.S1_at	BE023813	-	-	3e+0	At4g14305	-	C.G.	S.X.	Please select
0.02	2e+0	34	Hordeum vulgare	EBem10_SQ002_C21_at	EBem10_SQ002_C21	-	-	2e-1	At5g33390	glycine-rich protein	C.G.	S.X.	Please select
0.01	7e+0	34	Oryza sativa	Os03g0611800	9637.m02957	-	-	4e+0	At3g46070	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	4e+0	34	Triticum aestivum	TaAffx.88011.1.S1_at	CA616649	-	-	3e-1	At2g18600	RUB1-conjugating enzyme, putative	C.G.	S.X.	Please select
0.07	7e-2	38	Vitis vinifera	1622450_at	CB970586	-	-	5e-7	At2g45220	pectinesterase family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zea mays	Zm.9719.1.A1_at	BM332935	hypothetical protein LOC100273981	-	1e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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