Gene omics information

Query gene ID PtpAffx.214066.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5784.2PtpAffx.214066.1.S1_s_atpmrna27397hypothetical protein-2e-16At4g32980ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)S.X.H.G.
0.1423.5Ptp.3120.1.S1_x_atCF936283hypothetical protein-9e+0At5g47770FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)S.X.H.G.
0.1423.5PtpAffx.7311.1.S1_atCK091290hypothetical protein-2e-7At5g23940EMB3009 (embryo defective 3009)S.X.H.G.
0.1118.1Ptp.3120.1.S1_atCF936283hypothetical protein-9e+0At5g47770FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)S.X.H.G.
0.1016.3Ptp.5890.1.S1_atCK108981--8e-8At5g16030unknown proteinS.X.H.G.
0.1016.3PtpAffx.222272.1.S1_atpmrna39575hypothetical protein-1e-86At4g17300NS1S.X.H.G.
0.069.8PtpAffx.24009.1.A1_atCV279164--3e-2At3g12750ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.598.3GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
6.597.8GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
5.296.8GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue series
4.596.1GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.295.6GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
4.295.6GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
4.195.5GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
4.095.3GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue series
4.095.3GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
3.594.3GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.820894PtpAffx.27900.1.S1_atBU837920hypothetical protein-2e-2At4g32980ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)C.G.S.X.
0.055e-859PtpAffx.201636.1.S1_atpmrna3237hypothetical protein-3e-15At1g75430BLH11 (BEL1-LIKE HOMEODOMAIN 11)C.G.S.X.
0.081e-552PtpAffx.8016.1.S1_atCX182129hypothetical protein-3e-28At5g41410BEL1 (BELL 1)C.G.S.X.
0.052e-448PtpAffx.4870.1.A1_atCV271326--5e-19At2g27990BLH8 (BEL1-LIKE HOMEODOMAIN 8)C.G.S.X.
0.077e-446PtpAffx.205791.1.S1_atpmrna11453hypothetical protein-8e-17At1g75430BLH11 (BEL1-LIKE HOMEODOMAIN 11)C.G.S.X.
0.071e-242Ptp.5647.1.S1_atDN493660hypothetical protein-1e-37At4g34610BLH6 (BELL1-LIKE HOMEODOMAIN 6)C.G.S.X.
0.024e-240PtpAffx.207326.1.S1_s_atpmrna14525hypothetical protein-1e-40At2g23760BLH4 (BEL1-LIKE HOMEODOMAIN 4)C.G.S.X.
0.034e-240PtpAffx.107249.1.S1_atCV229384hypothetical protein-7e-13At4g36870BLH2 (BEL1-LIKE HOMEODOMAIN 2)C.G.S.X.
0.034e-240PtpAffx.107249.1.S1_s_atCV229384hypothetical protein-7e-13At4g36870BLH2 (BEL1-LIKE HOMEODOMAIN 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.122e-1687Arabidopsis thalianaAt4g32980829435ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.---C.G.S.X.
0.075e-859Glycine maxGmaAffx.60479.4.S1_atBG507369--8e-11At2g16400BLH7 (bell1-like homeodomain 7)C.G.S.X.
0.072e-756Hordeum vulgareContig17826_atContig17826--3e-14At4g32980ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)C.G.S.X.
0.066e-240Oryza sativaOs03g0732800AK107908.1-Homeodomain-like containing protein4e-6At4g36870BLH2 (BEL1-LIKE HOMEODOMAIN 2)C.G.S.X.
0.022e+034Triticum aestivumTaAffx.51334.1.S1_atCA727314--1e+0Atcg00420-C.G.S.X.
0.061e-756Vitis vinifera1620622_atCD718777--2e-11At2g16400BLH7 (bell1-like homeodomain 7)C.G.S.X.
0.023e+032Zea maysZm.6309.1.A1_atAI691331hypothetical protein LOC100193367-1e+0At2g25500-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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