Gene omics information

Query gene ID	PtpAffx.214003.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	84.9	PtpAffx.214003.1.S1_at	pmrna27278	hypothetical protein	-	5e-10	At3g02170	LNG2 (LONGIFOLIA2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.224577.1.S1_at	pmrna43232	hypothetical protein	-	2e-17	At5g03260	LAC11 (laccase 11)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.1316.2.S1_s_at	CA927435	hypothetical protein	-	2e-152	At4g13710	pectate lyase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.31440.1.A1_a_at	CV246320	hypothetical protein	-	1e+0	At2g36261	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.22629.2.S1_at	CV230488	hypothetical protein	-	2e-41	At4g19120	ERD3 (early-responsive to dehydration 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.212535.1.S1_at	pmrna24550	hypothetical protein	-	2e-9	At5g24580	copper-binding family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.1	99.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
16.6	99.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
15.1	99.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	2e-155	551	Ptp.1220.1.S1_s_at	BI072996	hypothetical protein	-	9e-1	At5g62440	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	2e-155	551	Ptp.1220.1.S1_at	BI072996	hypothetical protein	-	9e-1	At5g62440	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	4e-17	91	PtpAffx.204162.1.S1_at	pmrna8202	hypothetical protein	-	1e+0	At2g05400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-8	63	PtpAffx.223109.1.S1_at	pmrna40935	hypothetical protein	-	7e-15	At1g74160	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-8	63	PtpAffx.223109.1.S1_s_at	pmrna40935	hypothetical protein	-	7e-15	At1g74160	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-6	56	PtpAffx.210463.1.S1_s_at	pmrna20541	hypothetical protein	-	7e-12	At1g74160	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-4	48	PtpAffx.202296.1.S1_at	pmrna4593	hypothetical protein	-	2e-2	At2g39795	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	40	PtpAffx.213597.1.S1_at	pmrna26554	hypothetical protein	-	1e-2	At5g10910	mraW methylase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e-1	40	PtpAffx.213170.1.S1_at	pmrna25763	hypothetical protein	-	8e-2	At1g35900	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-10	67	Arabidopsis thaliana	At3g02170	821279	LNG2 (LONGIFOLIA2)	Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG2 homologue LNG1 (At5g15580) has similar function.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-11	71	Glycine max	GmaAffx.64396.1.S1_at	BU926459	-	-	8e-1	At4g35590	RWP-RK domain-containing protein	C.G.	S.X.	Please select
0.01	2e-1	38	Hordeum vulgare	Contig18302_at	Contig18302	-	-	6e-1	At4g02440	EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)	C.G.	S.X.	Please select
0.03	1e-5	54	Oryza sativa	Os03g0418700	AK101797.1	-	Conserved hypothetical protein	4e-1	At5g41960	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	7e+0	34	Triticum aestivum	TaAffx.55641.1.S1_at	CA663252	-	-	2e-1	At4g11470	protein kinase family protein	C.G.	S.X.	Please select
0.03	5e-1	36	Vitis vinifera	1613019_at	CD718307	hypothetical protein LOC100266999	-	5e+0	At5g66060	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	C.G.	S.X.	Please select
0.01	7e-1	36	Zea mays	Zm.4304.1.S1_at	AI834719	-	-	1e-3	At3g18600	DEAD/DEAH box helicase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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