Gene omics information

Query gene ID	PtpAffx.213954.1.S1_at
Gene name	pho1-like protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.213954.1.S1_at	pmrna27198	pho1-like protein	-	3e-13	At2g03260	EXS family protein / ERD1/XPR1/SYG1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.30567.1.A1_at	CV261850	hypothetical protein	-	1e-1	At5g41071	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.127785.1.S1_at	CV244219	hypothetical protein	-	6e+0	At4g35070	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.75514.1.A1_at	CV267254	-	-	8e-2	At2g01530	MLP329 (MLP-LIKE PROTEIN 329)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.211977.1.S1_at	pmrna23523	hypothetical protein	-	6e-3	At1g29000	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.22769.1.A1_at	CV270424	hypothetical protein	-	1e-1	At3g51330	aspartyl protease family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.1	99.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
8.1	98.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.9	98.0	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.1	97.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-123	444	PtpAffx.222655.1.S1_s_at	pmrna40202	pho1-like protein /// predicted small molecule transporter	-	1e-13	At3g29060	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	3e-23	111	PtpAffx.213229.1.S1_at	pmrna25876	pho1-like protein	-	9e-17	At1g26730	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	8e-18	93	PtpAffx.206045.1.S1_at	pmrna11981	predicted small molecule transporter	-	7e-12	At2g03250	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	2e-12	75	PtpAffx.209149.1.S1_x_at	pmrna18114	pho1-like protein	-	3e-16	At2g03240	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	2e-12	75	PtpAffx.209153.1.S1_x_at	pmrna18121	pho1-like protein /// pho1-like protein	-	2e-18	At2g03240	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	2e-12	75	PtpAffx.209145.1.S1_s_at	pmrna18109	predicted small molecule transporter /// pho1-like protein /// pho1-like protein	-	5e-15	At1g14040	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	2e-12	75	PtpAffx.207872.1.S1_at	pmrna15627	pho1-like protein	-	9e-17	At1g14040	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	2e-12	75	PtpAffx.207871.1.S1_at	pmrna15626	-	-	7e-27	At1g69480	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	2e-9	65	PtpAffx.218576.1.S1_s_at	pmrna34238	pho1-like protein	-	3e-16	At2g03240	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-13	77	Arabidopsis thaliana	At2g03260	814855	EXS family protein / ERD1/XPR1/SYG1 family protein	F:unknown;P:unknown;C:integral to membrane;FMPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-10	67	Glycine max	GmaAffx.77909.1.S1_at	BG882051	-	-	9e-11	At1g26730	EXS family protein / ERD1/XPR1/SYG1 family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Hordeum vulgare	Contig18089_at	Contig18089	-	-	5e+0	At4g31330	unknown protein	C.G.	S.X.	Please select
0.01	4e-2	42	Oryza sativa	Os03g0827500	AK067674.1	-	SPX, N-terminal domain containing protein	1e-4	At5g15330	SPX4 (SPX DOMAIN GENE 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-4	48	Triticum aestivum	Ta.1006.1.S1_at	CA630632	-	-	4e+0	At3g23430	PHO1 (phosphate 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1615827_at	BQ792666	hypothetical protein LOC100252878	-	1e+0	At3g22360	AOX1B	C.G.	S.X.	Please select
0.03	2e-9	63	Zea mays	Zm.11798.1.A1_at	BM380830	-	-	1e-6	At3g23430	PHO1 (phosphate 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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