CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.213910.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 82.2 PtpAffx.213910.1.S1_at pmrna27123 hypothetical protein - 3e-12 At3g01270 pectate lyase family protein S.X. H.G.
0.93 99.5 PtpAffx.202361.1.S1_at pmrna4739 hypothetical protein - 7e-2 At3g30845 unknown protein S.X. H.G.
0.80 96.0 PtpAffx.208399.1.S1_at pmrna16699 hypothetical protein - 2e-3 At5g47000 peroxidase, putative S.X. H.G.
0.71 92.6 PtpAffx.206026.1.S1_at pmrna11941 hypothetical protein - 2e-19 At5g05070 zinc ion binding S.X. H.G.
0.63 88.1 PtpAffx.205215.1.S1_s_at pmrna10336 hypothetical protein - 9e-2 At1g61920 unknown protein S.X. H.G.
0.61 87.0 PtpAffx.208441.1.S1_s_at pmrna16773 cation proton exchanger /// cation proton exchanger - 3e-13 At3g17630 ATCHX19 (CATION/H+ EXCHANGER 19) S.X. H.G.
0.60 86.0 PtpAffx.208853.1.S1_at pmrna17552 hypothetical protein - 4e-4 At1g67950 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.53 80.5 PtpAffx.210538.1.S1_at pmrna20659 hypothetical protein - 1e-33 At1g18990 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.6 99.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
18.8 99.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
16.7 99.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
12.4 99.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
12.3 99.3 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
12.2 99.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.0 33.6 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.0 33.6 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
0.0 33.6 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
0.0 33.6 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.85 0 1174 PtpAffx.204147.1.S1_at pmrna8173 hypothetical protein - 7e-10 At3g01270 pectate lyase family protein C.G. S.X.
0.16 7e-20 99 PtpAffx.208136.1.S1_at pmrna16167 hypothetical protein - 7e-7 At4g13710 pectate lyase family protein C.G. S.X.
0.11 3e-16 87 PtpAffx.215732.1.S1_at pmrna30090 hypothetical protein - 2e-7 At3g01270 pectate lyase family protein C.G. S.X.
0.05 2e-11 71 PtpAffx.203445.1.S1_x_at pmrna6864 hypothetical protein - 9e-134 At4g13710 pectate lyase family protein C.G. S.X.
0.08 1e-9 65 Ptp.4810.1.A1_s_at CK098630 hypothetical protein - 7e-37 At3g07010 pectate lyase family protein C.G. S.X.
0.09 1e-6 56 PtpAffx.1316.2.S1_s_at CA927435 hypothetical protein - 2e-152 At4g13710 pectate lyase family protein C.G. S.X.
0.07 2e-4 48 Ptp.5654.1.S1_s_at AI162459 hypothetical protein - 4e-78 At4g13710 pectate lyase family protein C.G. S.X.
0.03 4e-3 44 PtpAffx.211973.1.S1_at pmrna23517 hypothetical protein - 2e-40 At3g24670 pectate lyase family protein C.G. S.X.
0.03 6e-2 40 PtpAffx.200992.1.S1_s_at pmrna1952 hypothetical protein - 7e-29 At3g27400 pectate lyase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 3e-12 73 Arabidopsis thaliana At3g01270 821142 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO - - - C.G. S.X.
0.06 1e-9 65 Glycine max Gma.11298.3.S1_a_at BE059139 - - 9e-100 At4g13710 pectate lyase family protein C.G. S.X.
0.04 3e-4 46 Hordeum vulgare Contig11004_at Contig11004 - - 3e-22 At3g07010 pectate lyase family protein C.G. S.X.
0.07 6e-15 83 Oryza sativa Os06g0583900 AK072583.1 - - 2e-2 At4g24780 pectate lyase family protein C.G. S.X.
0.10 5e-20 99 Triticum aestivum Ta.10416.1.S1_at BQ170337 - - 3e-5 At4g13710 pectate lyase family protein C.G. S.X.
0.07 3e-6 52 Vitis vinifera 1607945_at AF243475.1 pectate lyase - 1e-39 At1g67750 pectate lyase family protein C.G. S.X.
0.09 8e-8 57 Zea mays Zm.10482.1.S1_at AW330949 hypothetical protein LOC100280002 - 9e-1 At1g04680 pectate lyase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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